STRINGSTRING
Spro_0887 Spro_0887 Spro_0888 Spro_0888 Spro_0889 Spro_0889 Spro_0890 Spro_0890 acpP acpP Spro_0892 Spro_0892 Spro_0893 Spro_0893 Spro_0894 Spro_0894 Spro_0895 Spro_0895 Spro_0896 Spro_0896 Spro_0897 Spro_0897 Spro_0898 Spro_0898 Spro_0899 Spro_0899 Spro_0900 Spro_0900 Spro_0901 Spro_0901 Spro_0902 Spro_0902 Spro_0903 Spro_0903
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spro_0887KEGG: yen:YE0895 putative lipoprotein. (133 aa)
Spro_0888KEGG: yen:YE0896 hypothetical protein. (226 aa)
Spro_0889PFAM: phospholipid/glycerol acyltransferase; KEGG: yen:YE0897 putative acyltransferase. (272 aa)
Spro_0890KEGG: yen:YE0898 putative acyl carrier protein. (91 aa)
acpPPhosphopantetheine-binding; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. (83 aa)
Spro_0892KEGG: yen:YE0900 putative inner membrane protein. (185 aa)
Spro_0893KEGG: yen:YE0901 putative AMP-binding protein. (457 aa)
Spro_0894PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: yen:YE0902 putative dehydratase. (114 aa)
Spro_0895PFAM: glycosyl transferase family 2; KEGG: yen:YE0903 putative bifunctional glycosyl transferase/acyl transferase. (572 aa)
Spro_0896PFAM: thioesterase superfamily protein; KEGG: yen:YE0904 putative thioesterase. (142 aa)
Spro_0897Putative outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). (201 aa)
Spro_0898KEGG: yen:YE0906 putative inner membrane protein. (768 aa)
Spro_0899KEGG: yen:YE0907 putative lipoprotein. (190 aa)
Spro_0900PFAM: Beta-ketoacyl synthase; KEGG: yen:YE0908 putative beta-ketoacyl-[ACP] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (389 aa)
Spro_0901PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: yen:YE0909 putative dehydratase. (157 aa)
Spro_0902TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase, putative; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: yen:YE0910 3-oxoacyl-[acyl-carrier protein] reductase. (243 aa)
Spro_0903PFAM: Beta-ketoacyl synthase; KEGG: yen:YE0911 3-oxoacyl-[acyl-carrier-protein] synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (409 aa)
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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