STRINGSTRING
Spro_2424 Spro_2424 Spro_2425 Spro_2425 Spro_2426 Spro_2426 Spro_2427 Spro_2427 Spro_2428 Spro_2428 Spro_2429 Spro_2429 Spro_2430 Spro_2430 Spro_2431 Spro_2431 Spro_2432 Spro_2432 Spro_2433 Spro_2433
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spro_2424TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: kpn:KPN_02090 formate dehydrogenase H, selenopolypeptide subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (718 aa)
Spro_2425PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: stm:STM2843 electron transport protein (FeS senter) from formate to hydrogen. (180 aa)
Spro_2426TIGRFAM: hydrogenase maturation protease; hydrogenase maturation protease HycI; hydrogenase maturation peptidase superfamily; PFAM: peptidase M52 hydrogen uptake protein; KEGG: sdy:SDY_2914 HycI. (156 aa)
Spro_2427PFAM: formate hydrogenlyase maturation HycH; KEGG: kpn:KPN_03055 processing of HycE (part of the FHL complex). (138 aa)
Spro_2428PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: ent:Ent638_3192 NADH ubiquinone oxidoreductase, 20 kDa subunit. (265 aa)
Spro_2429PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ecv:APECO1_3805 formate hydrogenlyase complex iron-sulfur protein. (181 aa)
Spro_2430PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: stm:STM2849 hydrogenase 3 large subunit. (567 aa)
Spro_2431PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: kpn:KPN_03059 hydrogenase 3, membrane subunit (part of FHL complex). (311 aa)
Spro_2432NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: spt:SPA2709 NADH dehydrogenase subunit N. (622 aa)
Spro_2433PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: stm:STM2852 hydrogenase-3 iron-sulfur subunit. (204 aa)
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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