STRINGSTRING
Spro_0466 Spro_0466 Spro_0665 Spro_0665 Spro_1730 Spro_1730 Spro_1759 Spro_1759 Spro_2648 Spro_2648 Spro_2991 Spro_2991
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spro_0466PFAM: protein of unknown function DUF1471; KEGG: yen:YE0412 hypothetical protein. (87 aa)
Spro_0665KEGG: yps:YPTB0585 membrane protein, transcribed divergently from SerB. (234 aa)
Spro_1730PFAM: porin Gram-negative type; KEGG: stm:STM1473 outer membrane protein N precursor; Belongs to the Gram-negative porin family. (369 aa)
Spro_1759PFAM: UvrD/REP helicase; KEGG: yen:YE1586 putative helicase IV. (684 aa)
Spro_2648PFAM: protein of unknown function DUF1471; KEGG: kpn:KPN_00833 hypothetical protein. (86 aa)
Spro_2991PFAM: UspA domain protein; KEGG: yen:YE2583 putative universal stress protein. (139 aa)
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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