STRINGSTRING
Spro_0088 Spro_0088 Spro_0089 Spro_0089 Spro_0245 Spro_0245 Spro_0382 Spro_0382 Spro_0768 Spro_0768 Spro_1132 Spro_1132 Spro_1230 Spro_1230 Spro_1635 Spro_1635 eco eco Spro_1774 Spro_1774 Spro_1810 Spro_1810 Spro_1827 Spro_1827 Spro_1897 Spro_1897 Spro_1995 Spro_1995 Spro_2073 Spro_2073 Spro_2601 Spro_2601 Spro_2676 Spro_2676 sbmC sbmC Spro_3312 Spro_3312 Spro_3339 Spro_3339 Spro_3340 Spro_3340 Spro_3341 Spro_3341 Spro_3342 Spro_3342 Spro_3343 Spro_3343 Spro_3344 Spro_3344 Spro_3491 Spro_3491 Spro_3546 Spro_3546 Spro_3680 Spro_3680 Spro_3681 Spro_3681 grcA grcA Spro_3894 Spro_3894 Spro_3895 Spro_3895 Spro_3896 Spro_3896 Spro_3897 Spro_3897 Spro_3898 Spro_3898 Spro_3980 Spro_3980 Spro_4481 Spro_4481 Spro_4482 Spro_4482 Spro_4739 Spro_4739 Spro_4740 Spro_4740
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spro_0088Hypothetical protein; KEGG: ypi:YpsIP31758_0230 putative lipoprotein. (215 aa)
Spro_0089PFAM: Glutathione S-transferase domain; KEGG: ent:Ent638_0139 glutathione S-transferase, C-terminal domain. (201 aa)
Spro_0245Protein tyrosine/serine phosphatase; KEGG: yen:YE0252 hypothetical protein. (260 aa)
Spro_0382TIGRFAM: YD repeat protein; KEGG: sbm:Shew185_0579 YD repeat protein. (852 aa)
Spro_0768KEGG: ypi:YpsIP31758_3380 hypothetical protein. (174 aa)
Spro_1132PFAM: Primosomal replication priB and priC; KEGG: ypi:YpsIP31758_3062 primosomal replication protein N''. (178 aa)
Spro_1230PFAM: outer membrane porin; KEGG: ecv:APECO1_1383 hypothetical protein. (467 aa)
Spro_1635KEGG: yen:YE1477 hypothetical protein. (250 aa)
ecoProteinase inhibitor I11 ecotin; General inhibitor of pancreatic serine proteases: inhibits chymotrypsin, trypsin, elastases, factor X, kallikrein as well as a variety of other proteases. (170 aa)
Spro_1774PFAM: O-antigen polymerase; KEGG: yen:YE1727 putative inner membrane protein. (418 aa)
Spro_1810Nuclease; PFAM: DNA/RNA non-specific endonuclease; KEGG: ypi:YpsIP31758_B0090 putative endonuclease. (265 aa)
Spro_1827PFAM: Antibiotic biosynthesis monooxygenase; KEGG: yen:YE3018 hypothetical protein. (99 aa)
Spro_1897PFAM: Antibiotic biosynthesis monooxygenase; KEGG: yen:YE1626 hypothetical protein. (95 aa)
Spro_1995TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: yen:YE2426 hypothetical protein. (562 aa)
Spro_2073KEGG: kpn:KPN_02024 hypothetical protein. (158 aa)
Spro_2601PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: ypi:YpsIP31758_1807 heat shock protein HslJ. (142 aa)
Spro_2676PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: ypi:YpsIP31758_1943 sulfate permease family protein. (567 aa)
sbmCTranscription activator effector binding; Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell. (156 aa)
Spro_3312PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: yps:YPTB2592 probable sodium:sulfate symporter. (610 aa)
Spro_3339Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: plu:plu3178 two-component sensor kinase. (472 aa)
Spro_3340Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: plu:plu3179 two-component response regulator. (224 aa)
Spro_3341Hypothetical protein. (106 aa)
Spro_3342PFAM: conserved hypothetical protein; KEGG: plu:plu3181 putative tricarboxylic transport membrane protein. (326 aa)
Spro_3343KEGG: stm:STM2787 tricarboxylic transport. (143 aa)
Spro_3344PFAM: protein of unknown function DUF112 transmembrane; KEGG: plu:plu3183 TctA protein. (505 aa)
Spro_3491KEGG: ypi:YpsIP31758_1269 hypothetical protein. (97 aa)
Spro_3546PFAM: MuA-transposase/repressor protein CI DNA-binding; KEGG: ypi:YpsIP31758_3614 hypothetical protein. (116 aa)
Spro_3680PFAM: Ankyrin; KEGG: yen:YE1006 putative phospholipase A accessory protein. (251 aa)
Spro_3681KEGG: yen:YE1005 phospholipase A. (320 aa)
grcAFormate C-acetyltransferase glycine radical; Acts as a radical domain for damaged PFL and possibly other radical proteins. (127 aa)
Spro_3894PFAM: Inner membrane CreD family protein; KEGG: yen:YE3382 hypothetical protein. (454 aa)
Spro_3895Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: yen:YE3383 putative histidine kinase sensor. (472 aa)
Spro_3896Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: yps:YPTB3171 putative response regulator CreB family. (231 aa)
Spro_3897PFAM: protein of unknown function DUF1434; KEGG: yen:YE3385 hypothetical protein. (140 aa)
Spro_3898PFAM: protein of unknown function DUF339; KEGG: kpn:KPN_03325 hypothetical protein. (88 aa)
Spro_3980KEGG: sec:SC4187 putative periplasmic or exported protein. (464 aa)
Spro_4481PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: plu:plu0317 PhlA hemolysin secretion/activation protein PhlB. (558 aa)
Spro_4482TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: yps:YPTB3652 hemolysin. (1615 aa)
Spro_4739PFAM: regulatory protein TetR; KEGG: yps:YPTB0195 putative TetR-family regulatory protein. (217 aa)
Spro_4740PFAM: protein of unknown function UPF0261; KEGG: yps:YPTB0196 hypothetical protein; Belongs to the UPF0261 family. (409 aa)
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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