STRINGSTRING
Spro_2813 Spro_2813 Spro_2814 Spro_2814 Spro_2815 Spro_2815 Spro_4278 Spro_4278 Spro_4279 Spro_4279 Spro_4280 Spro_4280 Spro_4281 Spro_4281
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spro_2813KEGG: yps:YPTB1634 PTS system, mannose-specific IIAB component; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; PTS system, mannose/fructose/sorbose family, IIA subunit; PFAM: PTS system fructose subfamily IIA component; PTS system sorbose subfamily IIB component. (323 aa)
Spro_2814TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: ypi:YpsIP31758_2369 PTS system, mannose/fructose/sorbose family, IIC component. (266 aa)
Spro_2815TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: sgl:SG1325 PTS system mannose-specific IID component ManZ. (280 aa)
Spro_4278PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: aha:AHA_2339 fructose permease IID component. (273 aa)
Spro_4279PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: aha:AHA_2340 PTS system, fructose(mannose)-specific IIC. (266 aa)
Spro_4280PFAM: PTS system sorbose subfamily IIB component; KEGG: aha:AHA_2341 PTS system mannose-specific EIIAB component (EIIAB-man). (164 aa)
Spro_4281PFAM: PTS system fructose subfamily IIA component; KEGG: aha:AHA_2342 PTS system, mannose/fructose/sorbose family, IIA component. (142 aa)
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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