STRINGSTRING
Spro_1961 Spro_1961 rbsA-2 rbsA-2 Spro_1963 Spro_1963 Spro_1964 Spro_1964 Spro_3218 Spro_3218 Spro_3219 Spro_3219 Spro_4227 Spro_4227 Spro_4228 Spro_4228 Spro_4229 Spro_4229 Spro_4765 Spro_4765 Spro_4766 Spro_4766 Spro_4767 Spro_4767 Spro_4768 Spro_4768
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spro_1961PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: kpn:KPN_00509 putative periplasmic binding protein. (309 aa)
rbsA-2ABC transporter-related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (494 aa)
Spro_1963Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: kpn:KPN_00511 putative bacterial inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (342 aa)
Spro_1964PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: hch:HCH_01166 ABC-type sugar transport system, periplasmic component. (305 aa)
Spro_3218ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: yen:YE2762 putative ABC transport system ATP-binding protein. (503 aa)
Spro_3219Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: yen:YE2763 ribose transport system, permease protein. (331 aa)
Spro_4227Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sbo:SBO_2572 putative transport system permease protein. (326 aa)
Spro_4228ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfv:SFV_2595 putative ATP-binding component of a transport system. (512 aa)
Spro_4229PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ecc:c3070 ABC transporter Periplasmic binding protein yphF precursor. (327 aa)
Spro_4765Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: yen:YE0144 putative sugar transport system permease. (330 aa)
Spro_4766Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: yps:YPTB0129 ABC ribose/sugar transporter, permease domain; Belongs to the binding-protein-dependent transport system permease family. (340 aa)
Spro_4767ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ypp:YPDSF_3519 sugar transport system ATP-binding protein. (503 aa)
Spro_4768PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: yen:YE0141 putative periplasmic protein precursor. (318 aa)
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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