STRINGSTRING
Spro_0857 Spro_0857 Spro_0858 Spro_0858 Spro_0859 Spro_0859 Spro_0861 Spro_0861 Spro_0862 Spro_0862 Spro_0863 Spro_0863 Spro_0865 Spro_0865 Spro_0866 Spro_0866 Spro_0867 Spro_0867 Spro_0868 Spro_0868 Spro_0869 Spro_0869 Spro_0870 Spro_0870 Spro_0873 Spro_0873 Spro_0874 Spro_0874 Spro_0875 Spro_0875
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spro_0857PFAM: late control D family protein; KEGG: yps:YPTB1739 similar to D protein bacteriophage 186 and P2. (363 aa)
Spro_0858PFAM: P2 GpU family protein; KEGG: yps:YPTB1740 putative phage tail protein. (157 aa)
Spro_0859TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: ent:Ent638_1357 phage tail-like protein. (701 aa)
Spro_0861PFAM: tail E family protein; KEGG: yps:YPTB1743 putative tail protein gpE P2 bacteriophage. (95 aa)
Spro_0862TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: yps:YPTB1744 putative tail tube protein FII (bacteriophage P2). (169 aa)
Spro_0863PFAM: tail sheath protein; KEGG: yps:YPTB1745 putative tail sheath protein (P2 and 186 bacteriophage). (389 aa)
Spro_0865PFAM: tail fiber repeat 2 protein; KEGG: plu:plu0021 hypothetical protein. (554 aa)
Spro_0866TIGRFAM: phage tail protein I; PFAM: tail protein I; KEGG: yen:YE1663 phage tail protein. (1097 aa)
Spro_0867PFAM: Baseplate J family protein; KEGG: yps:YPTB1749 probable bacteriophage protein. (302 aa)
Spro_0868PFAM: GPW/gp25 family protein; KEGG: yps:YPTB1750 possible phage-related protein. (116 aa)
Spro_0869TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: yps:YPTB1751 putative phage-related baseplate assembly protein. (211 aa)
Spro_0870PFAM: P2 phage tail completion R family protein; KEGG: yps:YPTB1850 gpR [Enterobacteria phage P2]. (154 aa)
Spro_0873PFAM: tail X family protein; KEGG: yps:YPTB1757 putative phage-related tail protein. (67 aa)
Spro_0874PFAM: replication gene A; KEGG: ecv:APECO1_4464 putative phage replication initiation protein. (687 aa)
Spro_0875Transcriptional regulator, TraR/DksA family; TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger DksA/TraR C4-type; KEGG: yen:YE1687 hypothetical 8.2 kDa protein in gpa 5'region. (73 aa)
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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