STRINGSTRING
Spro_1774 Spro_1774 Spro_4832 Spro_4832 Spro_4835 Spro_4835 Spro_4830 Spro_4830 Spro_4828 Spro_4828 Spro_4827 Spro_4827 Spro_4076 Spro_4076 Spro_3752 Spro_3752 Spro_3663 Spro_3663 Spro_4836 Spro_4836 Spro_4837 Spro_4837 Spro_3151 Spro_3151 Spro_3149 Spro_3149 Spro_2204 Spro_2204 Spro_1859 Spro_1859 Spro_1775 Spro_1775 Spro_4834 Spro_4834 Spro_1592 Spro_1592 Spro_0131 Spro_0131
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spro_1774PFAM: O-antigen polymerase; KEGG: yen:YE1727 putative inner membrane protein. (418 aa)
Spro_4832TIGRFAM: lipopolysaccharide heptosyltransferase III, putative; PFAM: glycosyl transferase family 9; KEGG: plu:plu4853 lipopolysaccharide core biosynthesis glycosyl transferase RfaQ. (360 aa)
Spro_4835PFAM: glycosyl transferase family 9; KEGG: dar:Daro_0162 glycosyl transferase, family 9. (337 aa)
Spro_4830PFAM: glycosyl transferase family 9; KEGG: sfu:Sfum_0372 glycosyl transferase, family 9. (363 aa)
Spro_4828KEGG: sgl:SG2197 putative lipopolysaccharide glycosyltransferase. (300 aa)
Spro_4827TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: ypi:YpsIP31758_0068 lipopolysaccharide heptosyltransferase I. (323 aa)
Spro_4076KEGG: kpn:KPN_01180 putative glycosyl transferase. (394 aa)
Spro_3752TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: ypi:YpsIP31758_1044 D,D-heptose 1,7-bisphosphate phosphatase. (201 aa)
Spro_3663PFAM: sulfatase; KEGG: asu:Asuc_1041 sulfatase. (512 aa)
Spro_4836Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. (425 aa)
Spro_4837PFAM: glycosyl transferase family 2; KEGG: yen:YE0068 lipopolysaccharide core biosynthesis glycosyl transferase. (257 aa)
Spro_3151KEGG: sgl:SG2197 putative lipopolysaccharide glycosyltransferase. (302 aa)
Spro_3149PFAM: glycosyl transferase family 9; KEGG: sfu:Sfum_0372 glycosyl transferase, family 9. (366 aa)
Spro_2204PFAM: sulfatase; protein of unknown function DUF1705; KEGG: yen:YE2150 hypothetical protein. (545 aa)
Spro_1859PFAM: sulfatase; KEGG: eca:ECA0044 hypothetical protein. (554 aa)
Spro_1775TIGRFAM: lipopolysaccharide heptosyltransferase III, putative; PFAM: glycosyl transferase family 9; KEGG: ypp:YPDSF_3215 lipopolysaccharide core biosynthesis protein. (389 aa)
Spro_4834PFAM: glycosyl transferase group 1; KEGG: sgl:SG2200 putative lipopolysaccharide glycosyltransferase. (365 aa)
Spro_1592PFAM: glycosyl transferase group 1; KEGG: bha:BH3663 lipopolysaccharide biosynthesis. (346 aa)
Spro_0131PFAM: sulfatase; KEGG: ypi:YpsIP31758_4081 phosphoethanolamine transferase. (564 aa)
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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