STRINGSTRING
Spro_4251 Spro_4251 Spro_0777 Spro_0777 Spro_1100 Spro_1100 Spro_4243 Spro_4243 Spro_4245 Spro_4245 Spro_4246 Spro_4246 Spro_4248 Spro_4248 Spro_4250 Spro_4250 Spro_4252 Spro_4252
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spro_4251TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: kpn:KPN_00160 pullulanase D protein. (660 aa)
Spro_0777PFAM: type II secretion system protein E; KEGG: eca:ECA3799 protein transport protein. (481 aa)
Spro_1100TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; KEGG: eca:ECA1153 hypothetical protein. (129 aa)
Spro_4243General secretion pathway L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (364 aa)
Spro_4245TIGRFAM: general secretion pathway protein J; KEGG: yen:YE3570a putative general secretion pathway protein J precursor. (197 aa)
Spro_4246TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: yen:YE3570 general secretion pathway protein I precursor. (126 aa)
Spro_4248TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: eca:ECA3106 general secretion pathway protein G. (148 aa)
Spro_4250General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (494 aa)
Spro_4252Hypothetical protein; KEGG: yen:YE3564 general secretion pathway protein C. (177 aa)
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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