STRINGSTRING
Spro_3732 Spro_3732 Spro_3896 Spro_3896 Spro_3910 Spro_3910 Spro_3990 Spro_3990 Spro_4047 Spro_4047 Spro_4051 Spro_4051 Spro_4054 Spro_4054 Spro_4342 Spro_4342 Spro_4587 Spro_4587 Spro_4621 Spro_4621 Spro_4735 Spro_4735 Spro_4736 Spro_4736 Spro_4810 Spro_4810 ntrC ntrC Spro_1041 Spro_1041 Spro_1065 Spro_1065 Spro_1244 Spro_1244 Spro_1285 Spro_1285 Spro_1286 Spro_1286 Spro_1498 Spro_1498 Spro_1501 Spro_1501 Spro_1508 Spro_1508 Spro_1848 Spro_1848 Spro_1958 Spro_1958 Spro_2013 Spro_2013 Spro_2590 Spro_2590 rssB rssB Spro_2900 Spro_2900 Spro_2910 Spro_2910 Spro_2979 Spro_2979 Spro_0132 Spro_0132 cheB cheB Spro_3172 Spro_3172 rcsB rcsB rcsC rcsC Spro_3340 Spro_3340 Spro_3405 Spro_3405 Spro_3490 Spro_3490 Spro_3557 Spro_3557 Spro_3589 Spro_3589 Spro_3590 Spro_3590 Spro_3651 Spro_3651 Spro_3452 Spro_3452 Spro_0569 Spro_0569 Spro_0509 Spro_0509 Spro_0478 Spro_0478 Spro_0681 Spro_0681 Spro_0790 Spro_0790 Spro_1028 Spro_1028 Spro_1035 Spro_1035
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spro_3732Response regulator receiver and unknown domain protein; PFAM: response regulator receiver; KEGG: eca:ECA2578 two-component response regulator. (229 aa)
Spro_3896Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: yps:YPTB3171 putative response regulator CreB family. (231 aa)
Spro_3910Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bch:Bcen2424_4924 two component transcriptional regulator, winged helix family. (219 aa)
Spro_3990Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: eca:ECA0008 two-component system response regulator. (220 aa)
Spro_4047PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: ypp:YPDSF_0554 ornithine decarboxylase. (720 aa)
Spro_4051PFAM: response regulator receiver; BetR domain protein; KEGG: sec:SC042 hypothetical protein. (277 aa)
Spro_4054Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sec:SC039 hypothetical protein. (547 aa)
Spro_4342Multi-sensor hybrid histidine kinase; KEGG: ypi:YpsIP31758_0469 putative aerobic respiration control sensor protein ArcB; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein. (779 aa)
Spro_4587PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: ent:Ent638_2723 two component transcriptional regulator, LytTR family. (241 aa)
Spro_4621Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: yen:YE4004 transcriptional regulatory protein. (239 aa)
Spro_4735Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sec:SC039 hypothetical protein. (594 aa)
Spro_4736PFAM: response regulator receiver; BetR domain protein; KEGG: bxe:Bxe_B1770 response regulator receiver domain protein(CheY). (283 aa)
Spro_4810Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ecp:ECP_4122 transcriptional regulatory protein CpxR. (232 aa)
ntrCNitrogen metabolism transcriptional regulator, NtrC, Fis Family; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (470 aa)
Spro_1041Two component transcriptional regulator, winged helix family; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ypi:YpsIP31758_3136 phosphate regulon transcriptional regulatory protein PhoB. (229 aa)
Spro_1065Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; KEGG: stm:STM1387 response regulator. (206 aa)
Spro_1244Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: eca:ECA1338 two-component response regulator of kdp operon. (229 aa)
Spro_1285Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; SMART: extracellular solute-binding protein family 3; KEGG: pfo:Pfl_1864 Hpt sensor hybrid histidine kinase. (1070 aa)
Spro_1286Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pfl:PFL_2955 DNA-binding response regulator, LuxR family. (213 aa)
Spro_1498TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pae:PA4885 two-component response regulator. (223 aa)
Spro_1501PFAM: regulatory protein LuxR; KEGG: reh:H16_B1626 response regulator, NarL-family. (209 aa)
Spro_1508Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bur:Bcep18194_C6809 two component transcriptional regulator, winged helix family. (237 aa)
Spro_1848Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; KEGG: yen:YE1831 response regulator protein. (218 aa)
Spro_1958Response regulator receiver and unknown domain protein; PFAM: response regulator receiver; KEGG: eca:ECA4398 two-component response regulator. (237 aa)
Spro_2013Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ypi:YpsIP31758_1608 transcriptional regulatory protein PhoP. (223 aa)
Spro_2590Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: yen:YE2083 two-component regulatory system, response regulator protein. (253 aa)
rssBResponse regulator receiver protein; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. (337 aa)
Spro_2900Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: eca:ECA2028 nitrate/nitrite response regulator. (216 aa)
Spro_2910PFAM: ANTAR domain protein; Nitrate and nitrite sensing domain protein; KEGG: eca:ECA2995 nitrate-and nitrite-responsive positive regulator. (426 aa)
Spro_2979PFAM: response regulator receiver; KEGG: eca:ECA1694 chemotaxis protein. (129 aa)
Spro_0132Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; KEGG: ypi:YpsIP31758_4080 transcriptional regulatory protein UhpA. (196 aa)
cheBResponse regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (349 aa)
Spro_3172PFAM: response regulator receiver; KEGG: yen:YE2655 response regulator protein. (228 aa)
rcsBTwo component transcriptional regulator, LuxR family; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions. (216 aa)
rcsCIntegral membrane sensor hybrid histidine kinase; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. (957 aa)
Spro_3340Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: plu:plu3179 two-component response regulator. (224 aa)
Spro_3405PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: yen:YE1227 putative two-component system response-regulator. (244 aa)
Spro_3490Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: yen:YE1153 nitrate/nitrite response regulator protein NarP. (210 aa)
Spro_3557Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: yen:YE1104 two-component system response regulator. (239 aa)
Spro_3589Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; Sigma-70 region 4 type 2; KEGG: reh:H16_B0523 response regulator, NarL-family. (210 aa)
Spro_3590Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: reh:H16_B0524 signal transduction histidine kinase containing a receiver domain (hybrid). (594 aa)
Spro_3651Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: yen:YE1037 two-component system response regulator. (445 aa)
Spro_3452Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: yen:YE1201 putative two-component system response regulator. (226 aa)
Spro_0569Response regulator receiver protein. (355 aa)
Spro_0509PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: yen:YE0455 ornithine decarboxylase, inducible. (723 aa)
Spro_0478Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ypi:YpsIP31758_3607 transcriptional regulatory protein BasR/PmrA. (220 aa)
Spro_0681Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: yen:YE0595 aerobic respiration control protein. (238 aa)
Spro_0790Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: ypm:YP_0304 two-component regulatory protein. (906 aa)
Spro_1028Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: ypi:YpsIP31758_4031 sensory box histidine kinase/response regulator. (870 aa)
Spro_1035Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ent:Ent638_0283 two component transcriptional regulator, winged helix family. (246 aa)
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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