STRINGSTRING
Spro_4611 Spro_4611 Spro_0479 Spro_0479 Spro_0636 Spro_0636 ftsI ftsI Spro_1198 Spro_1198 mrdA mrdA Spro_1352 Spro_1352 Spro_1628 Spro_1628 Spro_2075 Spro_2075 Spro_2273 Spro_2273 Spro_2275 Spro_2275 mrdA-2 mrdA-2 ftsI-2 ftsI-2 Spro_2561 Spro_2561 Spro_2636 Spro_2636 Spro_3614 Spro_3614 Spro_3981 Spro_3981 glsA glsA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spro_4611TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: yen:YE3979 penicillin-binding protein. (852 aa)
Spro_0479KEGG: yen:YE0424 penicillin-binding protein 4 precursor; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C. (477 aa)
Spro_0636PFAM: beta-lactamase; KEGG: yen:YE1402 putative penicillin-binding protein. (380 aa)
ftsIPeptidoglycan glycosyltransferase; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. (587 aa)
Spro_1198Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: yen:YE3005 putative penicillin-binding protein 5; Belongs to the peptidase S11 family. (428 aa)
mrdAPeptidoglycan glycosyltransferase; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. (631 aa)
Spro_1352PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: yen:YE2884 penicillin-binding protein 7 precursor; Belongs to the peptidase S11 family. (309 aa)
Spro_1628Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: yen:YE1471 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (401 aa)
Spro_2075PFAM: beta-lactamase; KEGG: oan:Oant_3736 beta-lactamase. (511 aa)
Spro_2273PFAM: beta-lactamase; KEGG: sbl:Sbal_2086 beta-lactamase. (378 aa)
Spro_2275PFAM: beta-lactamase; KEGG: bpd:BURPS668_A1860 putative esterase. (383 aa)
mrdA-2Peptidoglycan glycosyltransferase; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. (641 aa)
ftsI-2Peptidoglycan glycosyltransferase; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. (572 aa)
Spro_2561PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: bxe:Bxe_A1545 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Belongs to the peptidase S11 family. (320 aa)
Spro_2636Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: ent:Ent638_2578 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family. (389 aa)
Spro_3614TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: yen:YE1067 penicillin-binding protein. (774 aa)
Spro_3981Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). (836 aa)
glsAPFAM: Glutaminase, core; KEGG: ypi:YpsIP31758_0822 glutaminase; Belongs to the glutaminase family. (307 aa)
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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