STRINGSTRING
Spro_1790 Spro_1790 Spro_3015 Spro_3015 Spro_0869 Spro_0869 Spro_4187 Spro_4187
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spro_1790PFAM: Rhs element Vgr protein; KEGG: kpn:KPN_01329 hypothetical protein. (792 aa)
Spro_3015PFAM: Rhs element Vgr protein; KEGG: bbr:BB0793 hypothetical protein. (645 aa)
Spro_0869TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: yps:YPTB1751 putative phage-related baseplate assembly protein. (211 aa)
Spro_4187PFAM: Rhs element Vgr protein; KEGG: bbr:BB0793 hypothetical protein. (769 aa)
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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