STRINGSTRING
Spro_0053 Spro_0053 Spro_0076 Spro_0076 Spro_0112 Spro_0112 wecE wecE Spro_1440 Spro_1440 Spro_1626 Spro_1626 Spro_1729 Spro_1729 Spro_2017 Spro_2017 arnB arnB Spro_2262 Spro_2262 Spro_2563 Spro_2563 Spro_2789 Spro_2789 argD argD Spro_3028 Spro_3028 Spro_3088 Spro_3088 Spro_3401 Spro_3401 Spro_3618 Spro_3618 glyA glyA Spro_3719 Spro_3719 Spro_3869 Spro_3869 Spro_4067 Spro_4067 Spro_4220 Spro_4220 Spro_4306 Spro_4306 Spro_4307 Spro_4307 Spro_4445 Spro_4445 Spro_4786 Spro_4786
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spro_0053PFAM: aminotransferase class I and II; KEGG: yps:YPTB3907 valine--pyruvate transaminase. (440 aa)
Spro_0076Transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: yen:YE4144 putative transcriptional regulator. (488 aa)
Spro_0112Transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: syf:Synpcc7942_1725 regulatory protein GntR, HTH. (484 aa)
wecETDP-4-keto-6-deoxy-D-glucose transaminase; Catalyzes the synthesis of dTDP-4-amino-4,6-dideoxy-D- galactose (dTDP-Fuc4N) from dTDP-4-keto-6-deoxy-D-glucose (dTDP-D- Glc4O) and L-glutamate; Belongs to the DegT/DnrJ/EryC1 family. (376 aa)
Spro_1440Transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pfo:Pfl_5531 aminotransferase, class I and II. (482 aa)
Spro_1626Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: yen:YE1469 putative cystathionine gamma-synthase. (381 aa)
Spro_1729Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: yen:YE1561 aspartate aminotransferase. (401 aa)
Spro_2017PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: oan:Oant_4139 putative transcriptional regulator, GntR family. (505 aa)
arnBDegT/DnrJ/EryC1/StrS aminotransferase; Catalyzes the conversion of UDP-4-keto-arabinose (UDP-Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the DegT/DnrJ/EryC1 family. ArnB subfamily. (384 aa)
Spro_2262PFAM: aminotransferase class I and II; KEGG: yen:YE2010 putative aminotransferase. (393 aa)
Spro_2563PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: aav:Aave_0017 transcriptional regulator, GntR family. (434 aa)
Spro_2789PFAM: aminotransferase class I and II; KEGG: aha:AHA_3110 putative aminotransferase B. (383 aa)
argDAcetylornithine and succinylornithine aminotransferase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (404 aa)
Spro_3028PFAM: aminotransferase class I and II; KEGG: stp:Strop_0458 aminotransferase, class I and II. (407 aa)
Spro_3088Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: aha:AHA_0624 aromatic-amino-acid aminotransferase. (395 aa)
Spro_3401PFAM: aminotransferase class I and II; KEGG: yen:YE1231 putative aminotransferase. (411 aa)
Spro_3618PFAM: aminotransferase class I and II; KEGG: ypi:YpsIP31758_1857 aminotransferase, classes I and II. (392 aa)
glyAGlycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (417 aa)
Spro_3719PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: yen:YE0931 putative GntR-family transcriptional regulatory protein. (476 aa)
Spro_3869KEGG: vpa:VP1253 NifS-related protein; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V. (409 aa)
Spro_4067PFAM: aminotransferase class I and II; KEGG: bha:BH1695 aspartate aminotransferase. (457 aa)
Spro_4220PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pap:PSPA7_3030 transcriptional regulator, GntR family, with aminotransferase domain. (498 aa)
Spro_4306TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: kpn:KPN_03825 putative aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (421 aa)
Spro_4307PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pin:Ping_0569 transcriptional regulator (GntR family) with HTH domain. (488 aa)
Spro_4445Aromatic-amino-acid transaminase; PFAM: aminotransferase class I and II; KEGG: yps:YPTB0377 aspartate aminotransferase. (397 aa)
Spro_4786O-succinylhomoserine (thiol)-lyase; KEGG: ypi:YpsIP31758_0121 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein. (386 aa)
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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