STRINGSTRING
Spro_0625 Spro_0625 Spro_0626 Spro_0626 Spro_0627 Spro_0627 Spro_0628 Spro_0628 Spro_0629 Spro_0629 Spro_0630 Spro_0630 Spro_0631 Spro_0631 Spro_0634 Spro_0634 Spro_0635 Spro_0635 Spro_1170 Spro_1170 Spro_1557 Spro_1557 hisC hisC Spro_1729 Spro_1729 Spro_1956 Spro_1956 Spro_2010 Spro_2010 Spro_2303 Spro_2303 Spro_2403 Spro_2403 Spro_2470 Spro_2470 Spro_2541 Spro_2541 Spro_2704 Spro_2704 Spro_3088 Spro_3088 Spro_3095 Spro_3095 Spro_3658 Spro_3658 Spro_4067 Spro_4067 Spro_4305 Spro_4305 Spro_4445 Spro_4445 Spro_4624 Spro_4624
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spro_0625KEGG: plu:plu0990 hypothetical protein; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase. (210 aa)
Spro_0626KEGG: plu:plu0989 similar to C-terminal region of 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpaG [includes: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (HHDD isomerase); 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase (OPET decarboxylase)]; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG2 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase. (254 aa)
Spro_0627TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: kpn:KPN_04787 4-hydroxyphenylacetate catabolism; Belongs to the aldehyde dehydrogenase family. (484 aa)
Spro_06283,4-dihydroxyphenylacetate 2,3-dioxygenase; KEGG: kpn:KPN_04786 4-hydroxyphenylacetate catabolism; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B. (285 aa)
Spro_0629PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: plu:plu0986 5-carboxymethyl-2-hydroxy-muconic acid isomerase. (128 aa)
Spro_06302-oxo-hepta-3-ene-1,7-dioic acid hydratase; KEGG: ssn:SSON_4495 2-oxo-hept-3-ene-1,7-dioate hydratase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase. (267 aa)
Spro_0631KEGG: ssn:SSON_4494 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (HHED aldolase); TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (264 aa)
Spro_0634TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: stm:STM1099 4-hydroxyphenylacetate catabolism. (520 aa)
Spro_0635TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit; PFAM: flavin reductase domain protein FMN-binding; KEGG: plu:plu0974 4-hydroxyphenylacetic acid hydroxylase. (171 aa)
Spro_1170PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ret:RHE_PD00126 probable aryl-alcohol dehydrogenase protein. (364 aa)
Spro_1557TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: yen:YE2821 probable alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (375 aa)
hisCTIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: yen:YE2767 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (362 aa)
Spro_1729Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: yen:YE1561 aspartate aminotransferase. (401 aa)
Spro_1956PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pap:PSPA7_4414 aryl-alcohol dehydrogenase (benzyl alcoholdehydrogenase) (badh). (365 aa)
Spro_2010PFAM: Malate/L-lactate dehydrogenase; KEGG: ecv:APECO1_1289 hypothetical oxidoreductase; Belongs to the LDH2/MDH2 oxidoreductase family. (362 aa)
Spro_2303KEGG: vei:Veis_4629 fumarylacetoacetate (FAA) hydrolase. (334 aa)
Spro_2403PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: stm:STM1567 alcohol dehydrogenase. (337 aa)
Spro_2470TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: yen:YE3793 succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (483 aa)
Spro_2541PFAM: aldehyde dehydrogenase; KEGG: atc:AGR_L_2660 hypothetical protein. (477 aa)
Spro_2704PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: yen:YE2238 aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. (890 aa)
Spro_3088Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: aha:AHA_0624 aromatic-amino-acid aminotransferase. (395 aa)
Spro_3095TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: acr:Acry_0274 succinic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (491 aa)
Spro_3658PFAM: iron-containing alcohol dehydrogenase; KEGG: ent:Ent638_0142 iron-containing alcohol dehydrogenase. (383 aa)
Spro_4067PFAM: aminotransferase class I and II; KEGG: bha:BH1695 aspartate aminotransferase. (457 aa)
Spro_4305TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: eca:ECA2054 succinate-semialdehyde dehydrogenase [NADP+]; Belongs to the aldehyde dehydrogenase family. (484 aa)
Spro_4445Aromatic-amino-acid transaminase; PFAM: aminotransferase class I and II; KEGG: yps:YPTB0377 aspartate aminotransferase. (397 aa)
Spro_4624PFAM: Cupin 2 conserved barrel domain protein; KEGG: swi:Swit_3059 gentisate 1,2-dioxygenase. (344 aa)
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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