(11 nodes) Mixed, incl. Type 1 protein exporter, and Deglycase PfpI network (Pontibacter korlensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKD02204.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	AKD02205.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (491 aa)
	AKD02454.1	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (612 aa)
	AKD02607.1	Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
	AKD02833.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (617 aa)
	AKD02884.1	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)
	AKD02888.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (594 aa)
	AKD03723.1	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	AKD04029.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)
	AKD04440.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	AKD04441.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)

Your Current Organism:

Pontibacter korlensis

NCBI taxonomy Id: 400092
Other names: CCTCC AB 206081, NRRL B-51097, P. korlensis, Pontibacter korlensis Zhang et al. 2008, Pontibacter sp. z1, Pontibacter sp. z2, strain X14-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKD02204.1	AKD02205.1	PKOR_02480	PKOR_02485	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AKD02204.1	AKD02454.1	PKOR_02480	PKOR_04125	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AKD02204.1	AKD02833.1	PKOR_02480	PKOR_06460	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
AKD02204.1	AKD02884.1	PKOR_02480	PKOR_06795	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
AKD02204.1	AKD02888.1	PKOR_02480	PKOR_06815	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523
AKD02204.1	AKD04441.1	PKOR_02480	PKOR_16790	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
AKD02205.1	AKD02204.1	PKOR_02485	PKOR_02480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AKD02205.1	AKD04441.1	PKOR_02485	PKOR_16790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
AKD02454.1	AKD02204.1	PKOR_04125	PKOR_02480	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AKD02454.1	AKD02607.1	PKOR_04125	PKOR_05075	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
AKD02454.1	AKD03723.1	PKOR_04125	PKOR_12055	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
AKD02454.1	AKD04029.1	PKOR_04125	PKOR_14160	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AKD02454.1	AKD04440.1	PKOR_04125	PKOR_16785	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AKD02607.1	AKD02454.1	PKOR_05075	PKOR_04125	Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
AKD02607.1	AKD02833.1	PKOR_05075	PKOR_06460	Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
AKD02607.1	AKD02884.1	PKOR_05075	PKOR_06795	Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
AKD02607.1	AKD02888.1	PKOR_05075	PKOR_06815	Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
AKD02833.1	AKD02204.1	PKOR_06460	PKOR_02480	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
AKD02833.1	AKD02607.1	PKOR_06460	PKOR_05075	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
AKD02833.1	AKD03723.1	PKOR_06460	PKOR_12055	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500

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