(64 nodes) ATPases associated with a variety of cellular activities network (Pontibacter korlensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKD03395.1	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	AKD05420.1	Exodeoxyribonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (821 aa)
	AKD01966.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	AKD02002.1	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (606 aa)
	AKD02177.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	AKD02204.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	AKD02331.1	Glycine/betaine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	AKD02351.1	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
	dnaX	DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (620 aa)
	clpB	Clp protease ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (872 aa)
	AKD02454.1	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (612 aa)
	AKD02700.1	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
	radA	DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (459 aa)
	AKD02824.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (609 aa)
	AKD02833.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (617 aa)
	AKD05563.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	AKD02884.1	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)
	AKD02888.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (594 aa)
	AKD02956.1	Iron ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	AKD02959.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (556 aa)
	pstB	Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (254 aa)
	AKD05587.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	AKD03073.1	Xenobiotic-transporting ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)
	recA	Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (347 aa)
	ruvB	ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (347 aa)
	ftsH	Peptidase M41; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (710 aa)
	rho	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (581 aa)
	dnaA	Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (474 aa)
	lon	Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (829 aa)
	hslU	ATP-dependent protease; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (463 aa)
	atpD	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (503 aa)
	clpX	ATPase AAA; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (407 aa)
	AKD03620.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (626 aa)
	AKD03723.1	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	AKD03771.1	Clp protease ClpC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpA/ClpB family. (865 aa)
	AKD05686.1	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)
	AKD03809.1	Phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	AKD03811.1	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)
	AKD03925.1	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
	AKD03928.1	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AKD03996.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)
	AKD04029.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)
	AKD04061.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (327 aa)
	AKD04177.1	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
	AKD04179.1	Organic solvent ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AKD04201.1	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	AKD04234.1	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)
	AKD04250.1	Circadian clock protein KaiC; Acts as a promotor non-specific transcription repressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)
	AKD04289.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (731 aa)
	AKD04411.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)
	AKD04440.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	AKD04528.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (641 aa)
	AKD04579.1	ATP-dependent endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
	AKD05807.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	AKD04741.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (647 aa)
	AKD05818.1	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
	AKD04786.1	Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	AKD05832.1	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
	AKD04893.1	Phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	AKD04906.1	Gliding motility protein GldA; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	AKD05017.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	AKD05091.1	Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	AKD05154.1	Sulfate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	lolD	Lipoprotein ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (221 aa)

Your Current Organism:

Pontibacter korlensis

NCBI taxonomy Id: 400092
Other names: CCTCC AB 206081, NRRL B-51097, P. korlensis, Pontibacter korlensis Zhang et al. 2008, Pontibacter sp. z1, Pontibacter sp. z2, strain X14-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKD01966.1	AKD02002.1	PKOR_00920	PKOR_01150	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
AKD01966.1	AKD02884.1	PKOR_00920	PKOR_06795	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
AKD01966.1	AKD02888.1	PKOR_00920	PKOR_06815	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
AKD01966.1	AKD02956.1	PKOR_00920	PKOR_07220	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
AKD01966.1	AKD03395.1	PKOR_00920	PKOR_10015	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
AKD01966.1	AKD03928.1	PKOR_00920	PKOR_13480	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
AKD01966.1	AKD04061.1	PKOR_00920	PKOR_14370	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.500
AKD01966.1	AKD04179.1	PKOR_00920	PKOR_15145	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
AKD01966.1	AKD04893.1	PKOR_00920	PKOR_19580	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
AKD02002.1	AKD01966.1	PKOR_01150	PKOR_00920	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
AKD02002.1	AKD02204.1	PKOR_01150	PKOR_02480	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
AKD02002.1	AKD03073.1	PKOR_01150	PKOR_08000	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xenobiotic-transporting ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
AKD02002.1	AKD03723.1	PKOR_01150	PKOR_12055	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
AKD02002.1	AKD04029.1	PKOR_01150	PKOR_14160	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
AKD02002.1	AKD04289.1	PKOR_01150	PKOR_15830	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
AKD02002.1	AKD04440.1	PKOR_01150	PKOR_16785	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
AKD02002.1	AKD04906.1	PKOR_01150	PKOR_19655	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gliding motility protein GldA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
AKD02002.1	AKD05017.1	PKOR_01150	PKOR_20480	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
AKD02177.1	AKD03395.1	PKOR_02295	PKOR_10015	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
AKD02177.1	AKD04179.1	PKOR_02295	PKOR_15145	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907

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