(17 nodes) Cytosolic large ribosomal subunit network (Acinetobacter baumannii ATCC 17978)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1S_0284	50S ribosomal protein. (231 aa)
	A1S_0285	50S ribosomal protein. (168 aa)
	A1S_0286	50S ribosomal protein. (123 aa)
	A1S_0391	50S ribosomal protein L31 type B. (84 aa)
	A1S_0828	50S ribosomal protein L25. (98 aa)
	A1S_2423	50S ribosomal protein L31. (74 aa)
	A1S_2731	50S ribosomal protein L21. (103 aa)
	A1S_3062	50S ribosomal protein L15. (146 aa)
	A1S_3063	50S ribosomal protein L30. (58 aa)
	A1S_3065	50S ribosomal protein L18. (116 aa)
	A1S_3066	50S ribosomal protein L6. (177 aa)
	A1S_3069	50S ribosomal protein L5. (178 aa)
	A1S_3076	50S ribosomal protein L22. (109 aa)
	A1S_3077	50S ribosomal protein L2. (274 aa)
	A1S_3078	50S ribosomal protein L23. (106 aa)
	A1S_3079	50S ribosomal protein L4. (200 aa)
	A1S_3080	50S ribosomal protein L3. (212 aa)

Your Current Organism:

Acinetobacter baumannii ATCC 17978

NCBI taxonomy Id: 400667
Other names: A. baumannii ATCC 17978, Acinetobacter baumannii str. ATCC 17978, Acinetobacter baumannii strain ATCC 17978

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A1S_0284	A1S_0285	50S ribosomal protein.	50S ribosomal protein.	0.999
A1S_0284	A1S_0286	50S ribosomal protein.	50S ribosomal protein.	0.999
A1S_0284	A1S_0391	50S ribosomal protein.	50S ribosomal protein L31 type B.	0.974
A1S_0284	A1S_0828	50S ribosomal protein.	50S ribosomal protein L25.	0.997
A1S_0284	A1S_2423	50S ribosomal protein.	50S ribosomal protein L31.	0.974
A1S_0284	A1S_2731	50S ribosomal protein.	50S ribosomal protein L21.	0.997
A1S_0284	A1S_3062	50S ribosomal protein.	50S ribosomal protein L15.	0.999
A1S_0284	A1S_3063	50S ribosomal protein.	50S ribosomal protein L30.	0.999
A1S_0284	A1S_3065	50S ribosomal protein.	50S ribosomal protein L18.	0.999
A1S_0284	A1S_3066	50S ribosomal protein.	50S ribosomal protein L6.	0.999
A1S_0284	A1S_3069	50S ribosomal protein.	50S ribosomal protein L5.	0.999
A1S_0284	A1S_3076	50S ribosomal protein.	50S ribosomal protein L22.	0.999
A1S_0284	A1S_3077	50S ribosomal protein.	50S ribosomal protein L2.	0.999
A1S_0284	A1S_3078	50S ribosomal protein.	50S ribosomal protein L23.	0.999
A1S_0284	A1S_3079	50S ribosomal protein.	50S ribosomal protein L4.	0.997
A1S_0284	A1S_3080	50S ribosomal protein.	50S ribosomal protein L3.	0.999
A1S_0285	A1S_0284	50S ribosomal protein.	50S ribosomal protein.	0.999
A1S_0285	A1S_0286	50S ribosomal protein.	50S ribosomal protein.	0.999
A1S_0285	A1S_0391	50S ribosomal protein.	50S ribosomal protein L31 type B.	0.966
A1S_0285	A1S_0828	50S ribosomal protein.	50S ribosomal protein L25.	0.997