STRINGSTRING
BDP_0091 BDP_0091 crcB crcB crcB-2 crcB-2 BDP_0096 BDP_0096 BDP_0097 BDP_0097 BDP_0098 BDP_0098 BDP_0099 BDP_0099 BDP_0100 BDP_0100 BDP_0101 BDP_0101 pfrA pfrA hemK hemK BDP_0605 BDP_0605 BDP_0606 BDP_0606 BDP_0607 BDP_0607 livG livG livF livF BDP_0610 BDP_0610 rfe rfe nrdR nrdR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BDP_0091Conserved hypothetical protein. (523 aa)
crcBcrcB-like protein, campher resistance; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family. (346 aa)
crcB-2crcB-like protein campher resistance; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family. (122 aa)
BDP_0096Branched-chain amino acid ABC transport system permease component; Belongs to the binding-protein-dependent transport system permease family. (469 aa)
BDP_0097Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. (327 aa)
BDP_0098Branched-chain amino acid transport system ATP-binding protein. (331 aa)
BDP_0099Branched-chain amino acid transport system ATPase component. (286 aa)
BDP_0100Branched-chain amino acid transport system substrate-binding protein. (434 aa)
BDP_0101Branched-chain amino acid transporter system substrate-binding protein. (424 aa)
pfrAprfA Bacterial Peptide Chain Release Factor 1 (RF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. (340 aa)
hemKhemK Peptide release factor-glutamine N5-methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily. (298 aa)
BDP_0605Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein. (354 aa)
BDP_0606Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. (309 aa)
BDP_0607Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. (359 aa)
livGBranched-chain amino acid transport ATP-binding protein livG. (266 aa)
livFBranched-chain amino acid transport ATP-binding protein livF. (234 aa)
BDP_0610Sua5/YciO/YrdC/YwlC family protein; Belongs to the SUA5 family. (220 aa)
rfeRfe Undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase. (379 aa)
nrdRTranscriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes. (105 aa)
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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