(10 nodes) U2 snRNP network (Oryza glumipatula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9YPT8	Uncharacterized protein. (793 aa)
	A0A0D9YSB0	SF3b1 domain-containing protein. (1235 aa)
	A0A0D9YYT4	Matrin-type domain-containing protein. (507 aa)
	A0A0D9Z0H6	PSP domain-containing protein. (653 aa)
	A0A0D9Z513	Matrin-type domain-containing protein. (352 aa)
	A0A0D9ZEV0	RRM domain-containing protein. (130 aa)
	A0A0D9ZY79	Uncharacterized protein. (110 aa)
	A0A0E0AH26	CPSF_A domain-containing protein. (1355 aa)
	A0A0E0AT73	Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
	A0A0E0BBA2	Uncharacterized protein. (393 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9YPT8	A0A0D9YSB0	Uncharacterized protein.	SF3b1 domain-containing protein.	0.936
A0A0D9YPT8	A0A0D9YYT4	Uncharacterized protein.	Matrin-type domain-containing protein.	0.996
A0A0D9YPT8	A0A0D9Z0H6	Uncharacterized protein.	PSP domain-containing protein.	0.982
A0A0D9YPT8	A0A0D9Z513	Uncharacterized protein.	Matrin-type domain-containing protein.	0.995
A0A0D9YPT8	A0A0D9ZEV0	Uncharacterized protein.	RRM domain-containing protein.	0.933
A0A0D9YPT8	A0A0D9ZY79	Uncharacterized protein.	Uncharacterized protein.	0.937
A0A0D9YPT8	A0A0E0AH26	Uncharacterized protein.	CPSF_A domain-containing protein.	0.953
A0A0D9YPT8	A0A0E0AT73	Uncharacterized protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.932
A0A0D9YPT8	A0A0E0BBA2	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A0D9YSB0	A0A0D9YPT8	SF3b1 domain-containing protein.	Uncharacterized protein.	0.936
A0A0D9YSB0	A0A0D9YYT4	SF3b1 domain-containing protein.	Matrin-type domain-containing protein.	0.977
A0A0D9YSB0	A0A0D9Z0H6	SF3b1 domain-containing protein.	PSP domain-containing protein.	0.990
A0A0D9YSB0	A0A0D9Z513	SF3b1 domain-containing protein.	Matrin-type domain-containing protein.	0.968
A0A0D9YSB0	A0A0D9ZEV0	SF3b1 domain-containing protein.	RRM domain-containing protein.	0.989
A0A0D9YSB0	A0A0D9ZY79	SF3b1 domain-containing protein.	Uncharacterized protein.	0.956
A0A0D9YSB0	A0A0E0AH26	SF3b1 domain-containing protein.	CPSF_A domain-containing protein.	0.980
A0A0D9YSB0	A0A0E0AT73	SF3b1 domain-containing protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.970
A0A0D9YSB0	A0A0E0BBA2	SF3b1 domain-containing protein.	Uncharacterized protein.	0.978
A0A0D9YYT4	A0A0D9YPT8	Matrin-type domain-containing protein.	Uncharacterized protein.	0.996
A0A0D9YYT4	A0A0D9YSB0	Matrin-type domain-containing protein.	SF3b1 domain-containing protein.	0.977