(94 nodes) SNARE complex, and Retrograde transport at the Trans-Golgi-Network network (Oryza glumipatula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9Y444	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (347 aa)
	A0A0D9Y5Q8	Longin domain-containing protein; Belongs to the synaptobrevin family. (271 aa)
	A0A0D9Y672	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (443 aa)
	A0A0D9YAK7	V-SNARE domain-containing protein. (221 aa)
	A0A0D9YDV6	V-SNARE domain-containing protein. (240 aa)
	A0A0D9YFQ8	Uncharacterized protein. (1069 aa)
	A0A0D9YGC0	Uncharacterized protein. (235 aa)
	A0A0D9YGC2	Uncharacterized protein. (157 aa)
	A0A0D9YHW2	Uncharacterized protein; Belongs to the synaptobrevin family. (216 aa)
	A0A0D9YIV4	Vps53_N domain-containing protein. (834 aa)
	A0A0D9YJP5	Homeobox domain-containing protein. (1168 aa)
	A0A0D9YKE4	t-SNARE coiled-coil homology domain-containing protein. (270 aa)
	A0A0D9YKF2	Uncharacterized protein; Belongs to the synaptobrevin family. (207 aa)
	A0A0D9YLF1	t-SNARE coiled-coil homology domain-containing protein. (232 aa)
	A0A0D9YLP0	Uncharacterized protein. (95 aa)
	A0A0D9YP44	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (309 aa)
	A0A0D9YRN5	t-SNARE coiled-coil homology domain-containing protein. (283 aa)
	A0A0D9YRP1	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (567 aa)
	A0A0D9YRT4	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (622 aa)
	A0A0D9YRV5	Cog4 domain-containing protein. (761 aa)
	A0A0D9YT42	t-SNARE coiled-coil homology domain-containing protein. (259 aa)
	A0A0D9YVZ3	Uncharacterized protein. (283 aa)
	A0A0D9YX08	Uncharacterized protein. (258 aa)
	A0A0D9YY81	Uncharacterized protein. (782 aa)
	A0A0D9YZD4	RIC1 domain-containing protein. (1123 aa)
	A0A0D9Z0A0	t-SNARE coiled-coil homology domain-containing protein. (122 aa)
	A0A0D9Z0L6	Uncharacterized protein. (260 aa)
	A0A0D9Z125	Uncharacterized protein. (175 aa)
	A0A0D9Z2I5	Uncharacterized protein; Belongs to the synaptobrevin family. (223 aa)
	A0A0D9Z3G8	Uncharacterized protein. (323 aa)
	A0A0D9Z3U8	t-SNARE coiled-coil homology domain-containing protein. (243 aa)
	A0A0D9Z475	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function. (686 aa)
	A0A0D9Z8E7	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (203 aa)
	A0A0D9Z8Y4	Uncharacterized protein. (703 aa)
	A0A0D9ZAN0	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (664 aa)
	A0A0D9ZB80	Uncharacterized protein. (294 aa)
	A0A0D9ZCT1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (311 aa)
	A0A0D9ZCU6	Uncharacterized protein. (770 aa)
	A0A0D9ZE45	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (331 aa)
	A0A0D9ZE81	Uncharacterized protein; Belongs to the synaptobrevin family. (254 aa)
	A0A0D9ZFT7	Uncharacterized protein. (757 aa)
	A0A0D9ZHJ5	Vps54 domain-containing protein. (972 aa)
	A0A0D9ZHW7	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (797 aa)
	A0A0D9ZLZ2	Uncharacterized protein. (211 aa)
	A0A0D9ZMC5	YqaJ domain-containing protein. (255 aa)
	A0A0D9ZNE9	Syntaxin-18_N domain-containing protein. (316 aa)
	A0A0D9ZNH7	Uncharacterized protein. (206 aa)
	A0A0D9ZQR9	Uncharacterized protein. (305 aa)
	A0A0D9ZYG7	Uncharacterized protein. (822 aa)
	A0A0E0A1P7	Uncharacterized protein. (760 aa)
	A0A0E0A2P9	TMF_TATA_bd domain-containing protein. (1003 aa)
	A0A0E0A408	Uncharacterized protein. (159 aa)
	A0A0E0A486	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (341 aa)
	A0A0E0A4N2	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (562 aa)
	A0A0E0A5M0	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (305 aa)
	A0A0E0A5R6	Uncharacterized protein; Belongs to the synaptobrevin family. (197 aa)
	A0A0E0A6B6	Uncharacterized protein; Belongs to the synaptobrevin family. (314 aa)
	A0A0E0A6Z0	t-SNARE coiled-coil homology domain-containing protein. (279 aa)
	A0A0E0ABE7	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (378 aa)
	A0A0E0ABX4	Uncharacterized protein. (521 aa)
	A0A0E0AD17	Uncharacterized protein. (835 aa)
	A0A0E0AG45	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (303 aa)
	A0A0E0AHN7	Uncharacterized protein; Belongs to the synaptobrevin family. (269 aa)
	A0A0E0AKP4	Uncharacterized protein. (226 aa)
	A0A0E0AKS9	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (447 aa)
	A0A0E0AM95	Uncharacterized protein. (435 aa)
	A0A0E0AMT4	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (203 aa)
	A0A0E0APG7	Uncharacterized protein. (814 aa)
	A0A0E0APN6	V-SNARE coiled-coil homology domain-containing protein. (1483 aa)
	A0A0E0ASK6	YqaJ domain-containing protein. (335 aa)
	A0A0E0ASQ1	HP domain-containing protein. (895 aa)
	A0A0E0AT66	t-SNARE coiled-coil homology domain-containing protein. (341 aa)
	A0A0E0ATA1	Uncharacterized protein. (289 aa)
	A0A0E0AVV9	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (217 aa)
	A0A0E0AW42	Uncharacterized protein. (765 aa)
	A0A0E0AY43	Uncharacterized protein. (238 aa)
	A0A0E0AYQ9	WD_REPEATS_REGION domain-containing protein. (409 aa)
	A0A0E0AYX1	Uncharacterized protein; Belongs to the synaptobrevin family. (534 aa)
	A0A0E0AZ19	t-SNARE coiled-coil homology domain-containing protein. (121 aa)
	A0A0E0AZW6	Uncharacterized protein. (87 aa)
	A0A0E0B0L5	Uncharacterized protein. (256 aa)
	A0A0E0B2Z1	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (217 aa)
	A0A0E0B5K8	Uncharacterized protein. (239 aa)
	A0A0E0B7Y9	Uncharacterized protein; Belongs to the synaptobrevin family. (244 aa)
	A0A0E0BC00	Uncharacterized protein. (617 aa)
	A0A0E0BCF6	Uncharacterized protein. (187 aa)
	A0A0E0BDC7	Uncharacterized protein. (1107 aa)
	A0A0E0BFK4	Uncharacterized protein. (194 aa)
	A0A0E0BFT4	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (862 aa)
	A0A0E0BK20	Uncharacterized protein. (557 aa)
	A0A0E0BP55	Syntaxin-18_N domain-containing protein. (315 aa)
	A0A0E0BPA7	Uncharacterized protein. (143 aa)
	A0A0E0BQP5	Sec39 domain-containing protein. (2766 aa)
	A0A0E0BTN7	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family. (608 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9Y444	A0A0D9Y5Q8	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Longin domain-containing protein; Belongs to the synaptobrevin family.	0.986
A0A0D9Y444	A0A0D9Y672	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.916
A0A0D9Y444	A0A0D9YAK7	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	V-SNARE domain-containing protein.	0.967
A0A0D9Y444	A0A0D9YDV6	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	V-SNARE domain-containing protein.	0.967
A0A0D9Y444	A0A0D9YFQ8	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.849
A0A0D9Y444	A0A0D9YGC0	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.979
A0A0D9Y444	A0A0D9YGC2	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.979
A0A0D9Y444	A0A0D9YHW2	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.995
A0A0D9Y444	A0A0D9YIV4	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Vps53_N domain-containing protein.	0.539
A0A0D9Y444	A0A0D9YJP5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Homeobox domain-containing protein.	0.892
A0A0D9Y444	A0A0D9YKE4	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.947
A0A0D9Y444	A0A0D9YKF2	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.995
A0A0D9Y444	A0A0D9YLF1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.947
A0A0D9Y444	A0A0D9YLP0	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.993
A0A0D9Y444	A0A0D9YP44	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.847
A0A0D9Y444	A0A0D9YRN5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.710
A0A0D9Y444	A0A0D9YRP1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.495
A0A0D9Y444	A0A0D9YRT4	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.531
A0A0D9Y444	A0A0D9YRV5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Cog4 domain-containing protein.	0.891
A0A0D9Y444	A0A0D9YT42	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.710