35 items (Oryza glumipatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9Y8V9	Uncharacterized protein. (460 aa)
	A0A0D9YDD9	Hydrolase_4 domain-containing protein. (387 aa)
	A0A0D9YGL7	Uncharacterized protein. (481 aa)
	A0A0D9YIR2	Uncharacterized protein. (1189 aa)
	A0A0D9YN63	Uncharacterized protein. (554 aa)
	A0A0D9YNA6	Epimerase domain-containing protein. (346 aa)
	A0A0D9YP23	Hydrolase_4 domain-containing protein. (343 aa)
	A0A0D9YS23	Uncharacterized protein; Belongs to the cytochrome P450 family. (375 aa)
	A0A0D9YS26	Uncharacterized protein; Belongs to the cytochrome P450 family. (533 aa)
	A0A0D9YUV0	Uncharacterized protein. (272 aa)
	A0A0D9YV74	Phenylalanine ammonia-lyase. (701 aa)
	A0A0D9YV78	Phenylalanine ammonia-lyase. (713 aa)
	A0A0D9YWU9	Uncharacterized protein. (542 aa)
	A0A0D9YZX4	Epimerase domain-containing protein. (339 aa)
	A0A0D9Z268	Uncharacterized protein. (583 aa)
	A0A0D9ZIU7	Uncharacterized protein. (555 aa)
	A0A0D9ZMR6	Uncharacterized protein. (845 aa)
	A0A0D9ZN71	Phenylalanine ammonia-lyase. (707 aa)
	A0A0D9ZXE7	Uncharacterized protein. (262 aa)
	A0A0E0A133	Uncharacterized protein; Belongs to the cytochrome P450 family. (512 aa)
	A0A0E0A5J2	Uncharacterized protein. (260 aa)
	A0A0E0A5Z3	Uncharacterized protein. (442 aa)
	A0A0E0ACQ9	Uncharacterized protein. (559 aa)
	A0A0E0APC9	Uncharacterized protein. (394 aa)
	A0A0E0AQQ6	Uncharacterized protein. (592 aa)
	A0A0E0AS53	Uncharacterized protein. (479 aa)
	A0A0E0AVX7	Epimerase domain-containing protein. (375 aa)
	A0A0E0AX48	Uncharacterized protein. (443 aa)
	A0A0E0AX49	Uncharacterized protein. (550 aa)
	A0A0E0AYE7	Uncharacterized protein. (584 aa)
	A0A0E0B0D5	Epimerase domain-containing protein. (312 aa)
	A0A0E0B0E9	Epimerase domain-containing protein. (324 aa)
	A0A0E0B330	Uncharacterized protein. (440 aa)
	A0A0E0B764	Aldo_ket_red domain-containing protein. (226 aa)
	A0A0E0B8N3	Uncharacterized protein; Belongs to the cytochrome P450 family. (541 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9Y8V9	A0A0D9YDD9	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.890
A0A0D9Y8V9	A0A0D9YGL7	Uncharacterized protein.	Uncharacterized protein.	0.746
A0A0D9Y8V9	A0A0D9YIR2	Uncharacterized protein.	Uncharacterized protein.	0.898
A0A0D9Y8V9	A0A0D9YN63	Uncharacterized protein.	Uncharacterized protein.	0.669
A0A0D9Y8V9	A0A0D9YNA6	Uncharacterized protein.	Epimerase domain-containing protein.	0.516
A0A0D9Y8V9	A0A0D9YP23	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.893
A0A0D9Y8V9	A0A0D9YS23	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.686
A0A0D9Y8V9	A0A0D9YS26	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.686
A0A0D9Y8V9	A0A0D9YWU9	Uncharacterized protein.	Uncharacterized protein.	0.903
A0A0D9Y8V9	A0A0D9YZX4	Uncharacterized protein.	Epimerase domain-containing protein.	0.516
A0A0D9Y8V9	A0A0D9Z268	Uncharacterized protein.	Uncharacterized protein.	0.897
A0A0D9Y8V9	A0A0D9ZIU7	Uncharacterized protein.	Uncharacterized protein.	0.891
A0A0D9Y8V9	A0A0D9ZXE7	Uncharacterized protein.	Uncharacterized protein.	0.746
A0A0D9Y8V9	A0A0E0A133	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.718
A0A0D9Y8V9	A0A0E0A5J2	Uncharacterized protein.	Uncharacterized protein.	0.761
A0A0D9Y8V9	A0A0E0A5Z3	Uncharacterized protein.	Uncharacterized protein.	0.777
A0A0D9Y8V9	A0A0E0ACQ9	Uncharacterized protein.	Uncharacterized protein.	0.669
A0A0D9Y8V9	A0A0E0AQQ6	Uncharacterized protein.	Uncharacterized protein.	0.760
A0A0D9Y8V9	A0A0E0AS53	Uncharacterized protein.	Uncharacterized protein.	0.469
A0A0D9Y8V9	A0A0E0AVX7	Uncharacterized protein.	Epimerase domain-containing protein.	0.516