6 items (Oryza glumipatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9YGL7	Uncharacterized protein. (481 aa)
	A0A0D9YV78	Phenylalanine ammonia-lyase. (713 aa)
	A0A0D9Z268	Uncharacterized protein. (583 aa)
	A0A0D9ZN71	Phenylalanine ammonia-lyase. (707 aa)
	A0A0D9ZXE7	Uncharacterized protein. (262 aa)
	A0A0E0ACQ9	Uncharacterized protein. (559 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9YGL7	A0A0D9YV78	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.917
A0A0D9YGL7	A0A0D9Z268	Uncharacterized protein.	Uncharacterized protein.	0.941
A0A0D9YGL7	A0A0D9ZN71	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.904
A0A0D9YGL7	A0A0D9ZXE7	Uncharacterized protein.	Uncharacterized protein.	0.871
A0A0D9YGL7	A0A0E0ACQ9	Uncharacterized protein.	Uncharacterized protein.	0.945
A0A0D9YV78	A0A0D9YGL7	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.917
A0A0D9YV78	A0A0D9Z268	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.926
A0A0D9YV78	A0A0D9ZXE7	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.902
A0A0D9YV78	A0A0E0ACQ9	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.934
A0A0D9Z268	A0A0D9YGL7	Uncharacterized protein.	Uncharacterized protein.	0.941
A0A0D9Z268	A0A0D9YV78	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.926
A0A0D9Z268	A0A0D9ZN71	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.933
A0A0D9Z268	A0A0D9ZXE7	Uncharacterized protein.	Uncharacterized protein.	0.941
A0A0D9ZN71	A0A0D9YGL7	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.904
A0A0D9ZN71	A0A0D9Z268	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.933
A0A0D9ZN71	A0A0D9ZXE7	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.891
A0A0D9ZN71	A0A0E0ACQ9	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.934
A0A0D9ZXE7	A0A0D9YGL7	Uncharacterized protein.	Uncharacterized protein.	0.871
A0A0D9ZXE7	A0A0D9YV78	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.902
A0A0D9ZXE7	A0A0D9Z268	Uncharacterized protein.	Uncharacterized protein.	0.941