27 items (Oryza glumipatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9Y3C4	F-box domain-containing protein. (505 aa)
	A0A0D9YIB3	Uncharacterized protein. (842 aa)
	A0A0D9YRW0	Histone domain-containing protein. (272 aa)
	A0A0D9YX64	Uncharacterized protein. (1609 aa)
	A0A0D9YYW5	Histone H2A; Belongs to the histone H2A family. (137 aa)
	A0A0D9Z259	Uncharacterized protein. (1489 aa)
	A0A0D9Z677	SET domain-containing protein. (881 aa)
	A0A0D9ZAX6	WD_REPEATS_REGION domain-containing protein. (634 aa)
	A0A0D9ZKN6	Histone H3; Belongs to the histone H3 family. (136 aa)
	A0A0D9ZKU7	Uncharacterized protein. (657 aa)
	A0A0D9ZVD2	Uncharacterized protein. (1219 aa)
	A0A0D9ZZB7	Uncharacterized protein. (719 aa)
	A0A0E0A0C9	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (102 aa)
	A0A0E0A0F5	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (77 aa)
	A0A0E0A0Z6	Histone domain-containing protein. (164 aa)
	A0A0E0A343	Histone domain-containing protein; Belongs to the histone H2B family. (115 aa)
	A0A0E0A5D8	Uncharacterized protein. (108 aa)
	A0A0E0A832	Uncharacterized protein. (934 aa)
	A0A0E0AJZ6	CAF1C_H4-bd domain-containing protein. (314 aa)
	A0A0E0AL26	Histone H2A; Belongs to the histone H2A family. (135 aa)
	A0A0E0AQL1	WD_REPEATS_REGION domain-containing protein. (511 aa)
	A0A0E0AQL4	WD_REPEATS_REGION domain-containing protein. (466 aa)
	A0A0E0AU39	Uncharacterized protein. (481 aa)
	A0A0E0AXF0	VEFS-Box domain-containing protein. (619 aa)
	A0A0E0B155	VEFS-Box domain-containing protein. (732 aa)
	A0A0E0B6W2	Histone domain-containing protein; Belongs to the histone H2B family. (198 aa)
	A0A0E0B8Z6	Chromo domain-containing protein. (413 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9Y3C4	A0A0D9YIB3	F-box domain-containing protein.	Uncharacterized protein.	0.832
A0A0D9Y3C4	A0A0D9YRW0	F-box domain-containing protein.	Histone domain-containing protein.	0.640
A0A0D9Y3C4	A0A0D9YX64	F-box domain-containing protein.	Uncharacterized protein.	0.857
A0A0D9Y3C4	A0A0D9YYW5	F-box domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.740
A0A0D9Y3C4	A0A0D9Z259	F-box domain-containing protein.	Uncharacterized protein.	0.905
A0A0D9Y3C4	A0A0D9Z677	F-box domain-containing protein.	SET domain-containing protein.	0.734
A0A0D9Y3C4	A0A0D9ZAX6	F-box domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.466
A0A0D9Y3C4	A0A0D9ZKN6	F-box domain-containing protein.	Histone H3; Belongs to the histone H3 family.	0.631
A0A0D9Y3C4	A0A0D9ZKU7	F-box domain-containing protein.	Uncharacterized protein.	0.676
A0A0D9Y3C4	A0A0D9ZVD2	F-box domain-containing protein.	Uncharacterized protein.	0.536
A0A0D9Y3C4	A0A0D9ZZB7	F-box domain-containing protein.	Uncharacterized protein.	0.832
A0A0D9Y3C4	A0A0E0A0C9	F-box domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.877
A0A0D9Y3C4	A0A0E0A0F5	F-box domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.877
A0A0D9Y3C4	A0A0E0A0Z6	F-box domain-containing protein.	Histone domain-containing protein.	0.694
A0A0D9Y3C4	A0A0E0A5D8	F-box domain-containing protein.	Uncharacterized protein.	0.626
A0A0D9Y3C4	A0A0E0A832	F-box domain-containing protein.	Uncharacterized protein.	0.734
A0A0D9Y3C4	A0A0E0AJZ6	F-box domain-containing protein.	CAF1C_H4-bd domain-containing protein.	0.466
A0A0D9Y3C4	A0A0E0AL26	F-box domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.738
A0A0D9Y3C4	A0A0E0AQL1	F-box domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.710
A0A0D9Y3C4	A0A0E0AQL4	F-box domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.710