8 items (Oryza glumipatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9YRW1	Histone H3; Belongs to the histone H3 family. (139 aa)
	A0A0D9YUY0	Uncharacterized protein. (265 aa)
	A0A0E0A2I4	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (567 aa)
	A0A0E0AFC8	F-box domain-containing protein. (772 aa)
	A0A0E0B1S8	Uncharacterized protein. (350 aa)
	A0A0E0B1U4	Hat1_N domain-containing protein. (415 aa)
	A0A0E0B3C1	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	A0A0E0B5W8	WD_REPEATS_REGION domain-containing protein. (413 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9YRW1	A0A0D9YUY0	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.641
A0A0D9YRW1	A0A0E0A2I4	Histone H3; Belongs to the histone H3 family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.729
A0A0D9YRW1	A0A0E0AFC8	Histone H3; Belongs to the histone H3 family.	F-box domain-containing protein.	0.783
A0A0D9YRW1	A0A0E0B1S8	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.776
A0A0D9YRW1	A0A0E0B1U4	Histone H3; Belongs to the histone H3 family.	Hat1_N domain-containing protein.	0.776
A0A0D9YRW1	A0A0E0B3C1	Histone H3; Belongs to the histone H3 family.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.902
A0A0D9YRW1	A0A0E0B5W8	Histone H3; Belongs to the histone H3 family.	WD_REPEATS_REGION domain-containing protein.	0.641
A0A0D9YUY0	A0A0D9YRW1	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.641
A0A0D9YUY0	A0A0E0A2I4	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.744
A0A0D9YUY0	A0A0E0AFC8	Uncharacterized protein.	F-box domain-containing protein.	0.878
A0A0D9YUY0	A0A0E0B1S8	Uncharacterized protein.	Uncharacterized protein.	0.916
A0A0D9YUY0	A0A0E0B1U4	Uncharacterized protein.	Hat1_N domain-containing protein.	0.916
A0A0D9YUY0	A0A0E0B3C1	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.860
A0A0E0A2I4	A0A0D9YRW1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Histone H3; Belongs to the histone H3 family.	0.729
A0A0E0A2I4	A0A0D9YUY0	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.744
A0A0E0A2I4	A0A0E0AFC8	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	F-box domain-containing protein.	0.974
A0A0E0A2I4	A0A0E0B1S8	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.894
A0A0E0A2I4	A0A0E0B1U4	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Hat1_N domain-containing protein.	0.894
A0A0E0A2I4	A0A0E0B3C1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.889
A0A0E0A2I4	A0A0E0B5W8	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	WD_REPEATS_REGION domain-containing protein.	0.744