13 items (Oryza glumipatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9Y3Y5	BZIP domain-containing protein. (347 aa)
	A0A0D9YLZ4	Mitogen-activated protein kinase. (570 aa)
	A0A0D9YN27	BZIP domain-containing protein. (285 aa)
	A0A0D9YNX9	BZIP domain-containing protein. (359 aa)
	A0A0D9YQ73	BZIP domain-containing protein. (299 aa)
	A0A0D9Z364	Mitogen-activated protein kinase. (585 aa)
	A0A0D9ZEE6	BZIP domain-containing protein. (424 aa)
	A0A0D9ZZ52	BZIP domain-containing protein. (646 aa)
	A0A0E0A359	Protein kinase domain-containing protein. (569 aa)
	A0A0E0ACU9	BZIP domain-containing protein. (278 aa)
	A0A0E0AE63	Mitogen-activated protein kinase. (580 aa)
	A0A0E0ANG4	BZIP domain-containing protein. (568 aa)
	A0A0E0BUX0	BZIP domain-containing protein. (299 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9Y3Y5	A0A0D9YLZ4	BZIP domain-containing protein.	Mitogen-activated protein kinase.	0.767
A0A0D9Y3Y5	A0A0D9YN27	BZIP domain-containing protein.	BZIP domain-containing protein.	0.871
A0A0D9Y3Y5	A0A0D9YQ73	BZIP domain-containing protein.	BZIP domain-containing protein.	0.871
A0A0D9Y3Y5	A0A0D9Z364	BZIP domain-containing protein.	Mitogen-activated protein kinase.	0.767
A0A0D9Y3Y5	A0A0D9ZEE6	BZIP domain-containing protein.	BZIP domain-containing protein.	0.871
A0A0D9Y3Y5	A0A0E0A359	BZIP domain-containing protein.	Protein kinase domain-containing protein.	0.767
A0A0D9Y3Y5	A0A0E0ACU9	BZIP domain-containing protein.	BZIP domain-containing protein.	0.871
A0A0D9Y3Y5	A0A0E0AE63	BZIP domain-containing protein.	Mitogen-activated protein kinase.	0.767
A0A0D9Y3Y5	A0A0E0BUX0	BZIP domain-containing protein.	BZIP domain-containing protein.	0.871
A0A0D9YLZ4	A0A0D9Y3Y5	Mitogen-activated protein kinase.	BZIP domain-containing protein.	0.767
A0A0D9YLZ4	A0A0D9YN27	Mitogen-activated protein kinase.	BZIP domain-containing protein.	0.545
A0A0D9YLZ4	A0A0D9YNX9	Mitogen-activated protein kinase.	BZIP domain-containing protein.	0.767
A0A0D9YLZ4	A0A0D9YQ73	Mitogen-activated protein kinase.	BZIP domain-containing protein.	0.545
A0A0D9YLZ4	A0A0D9ZEE6	Mitogen-activated protein kinase.	BZIP domain-containing protein.	0.545
A0A0D9YLZ4	A0A0D9ZZ52	Mitogen-activated protein kinase.	BZIP domain-containing protein.	0.767
A0A0D9YLZ4	A0A0E0ACU9	Mitogen-activated protein kinase.	BZIP domain-containing protein.	0.545
A0A0D9YLZ4	A0A0E0ANG4	Mitogen-activated protein kinase.	BZIP domain-containing protein.	0.767
A0A0D9YLZ4	A0A0E0BUX0	Mitogen-activated protein kinase.	BZIP domain-containing protein.	0.545
A0A0D9YN27	A0A0D9Y3Y5	BZIP domain-containing protein.	BZIP domain-containing protein.	0.871
A0A0D9YN27	A0A0D9YLZ4	BZIP domain-containing protein.	Mitogen-activated protein kinase.	0.545