(12 nodes) Transcription factor TFIID complex network (Oryza glumipatula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9Y7V6	Uncharacterized protein. (159 aa)
	A0A0D9Y9E9	TAF domain-containing protein. (539 aa)
	A0A0D9YCF8	TAFII55_N domain-containing protein. (147 aa)
	A0A0D9YD62	TAFII28 domain-containing protein. (503 aa)
	A0A0D9YVT8	Uncharacterized protein. (709 aa)
	A0A0D9Z8R8	Uncharacterized protein. (178 aa)
	A0A0D9Z9E0	Uncharacterized protein. (809 aa)
	A0A0E0ACI6	Uncharacterized protein. (1824 aa)
	A0A0E0ACL2	WD_REPEATS_REGION domain-containing protein. (604 aa)
	A0A0E0AH37	WD_REPEATS_REGION domain-containing protein. (613 aa)
	A0A0E0B2U2	Peptidase_M1 domain-containing protein. (1454 aa)
	A0A0E0B3B0	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. (164 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9Y7V6	A0A0D9Y9E9	Uncharacterized protein.	TAF domain-containing protein.	0.999
A0A0D9Y7V6	A0A0D9YCF8	Uncharacterized protein.	TAFII55_N domain-containing protein.	0.999
A0A0D9Y7V6	A0A0D9YD62	Uncharacterized protein.	TAFII28 domain-containing protein.	0.999
A0A0D9Y7V6	A0A0D9YVT8	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A0D9Y7V6	A0A0D9Z8R8	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A0D9Y7V6	A0A0D9Z9E0	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A0D9Y7V6	A0A0E0ACI6	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0D9Y7V6	A0A0E0ACL2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.990
A0A0D9Y7V6	A0A0E0AH37	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.990
A0A0D9Y7V6	A0A0E0B2U2	Uncharacterized protein.	Peptidase_M1 domain-containing protein.	0.999
A0A0D9Y7V6	A0A0E0B3B0	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	0.999
A0A0D9Y9E9	A0A0D9Y7V6	TAF domain-containing protein.	Uncharacterized protein.	0.999
A0A0D9Y9E9	A0A0D9YCF8	TAF domain-containing protein.	TAFII55_N domain-containing protein.	0.999
A0A0D9Y9E9	A0A0D9YD62	TAF domain-containing protein.	TAFII28 domain-containing protein.	0.999
A0A0D9Y9E9	A0A0D9YVT8	TAF domain-containing protein.	Uncharacterized protein.	0.993
A0A0D9Y9E9	A0A0D9Z8R8	TAF domain-containing protein.	Uncharacterized protein.	0.990
A0A0D9Y9E9	A0A0D9Z9E0	TAF domain-containing protein.	Uncharacterized protein.	0.993
A0A0D9Y9E9	A0A0E0ACI6	TAF domain-containing protein.	Uncharacterized protein.	0.999
A0A0D9Y9E9	A0A0E0ACL2	TAF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.990
A0A0D9Y9E9	A0A0E0AH37	TAF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.990