(29 nodes) Pollen wall assembly network (Oryza glumipatula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9ZF68	Uncharacterized protein. (842 aa)
	A0A0D9ZIU7	Uncharacterized protein. (555 aa)
	A0A0D9ZKH8	Uncharacterized protein. (732 aa)
	A0A0E0BNH3	Uncharacterized protein. (680 aa)
	A0A0E0BKM3	AAI domain-containing protein. (132 aa)
	A0A0E0BEY2	Uncharacterized protein. (973 aa)
	A0A0E0BCW9	Uncharacterized protein. (532 aa)
	A0A0E0BCW8	Uncharacterized protein. (515 aa)
	A0A0E0BCW7	Uncharacterized protein. (511 aa)
	A0A0E0BBK6	Uncharacterized protein; Belongs to the sterol desaturase family. (590 aa)
	A0A0E0AJK5	Uncharacterized protein. (69 aa)
	A0A0E0ABP1	ABC transporter domain-containing protein. (660 aa)
	A0A0E0A8K7	Uncharacterized protein. (237 aa)
	A0A0E0A748	AAI domain-containing protein; Belongs to the plant LTP family. (233 aa)
	A0A0E0A6Z7	C2 domain-containing protein. (2179 aa)
	A0A0E0A4H1	Uncharacterized protein; Belongs to the cytochrome P450 family. (525 aa)
	A0A0D9ZZV5	Uncharacterized protein. (769 aa)
	A0A0D9ZWQ9	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family. (702 aa)
	A0A0D9ZQK0	Uncharacterized protein. (496 aa)
	A0A0D9ZPJ3	Uncharacterized protein. (506 aa)
	A0A0D9ZLZ5	Uncharacterized protein. (197 aa)
	A0A0D9Y2Q7	Epimerase domain-containing protein. (336 aa)
	A0A0D9Y7L1	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (862 aa)
	A0A0D9YS36	Uncharacterized protein. (854 aa)
	A0A0D9YTZ0	Uncharacterized protein. (396 aa)
	A0A0D9YWU9	Uncharacterized protein. (542 aa)
	A0A0D9Z2L6	Uncharacterized protein. (544 aa)
	A0A0D9Z514	Str_synth domain-containing protein. (430 aa)
	A0A0D9ZH09	AAI domain-containing protein. (345 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9Y2Q7	A0A0D9YWU9	Epimerase domain-containing protein.	Uncharacterized protein.	0.742
A0A0D9Y2Q7	A0A0D9Z2L6	Epimerase domain-containing protein.	Uncharacterized protein.	0.554
A0A0D9Y2Q7	A0A0D9ZIU7	Epimerase domain-containing protein.	Uncharacterized protein.	0.744
A0A0D9Y2Q7	A0A0D9ZPJ3	Epimerase domain-containing protein.	Uncharacterized protein.	0.554
A0A0D9Y2Q7	A0A0D9ZQK0	Epimerase domain-containing protein.	Uncharacterized protein.	0.403
A0A0D9Y2Q7	A0A0E0A4H1	Epimerase domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.554
A0A0D9Y2Q7	A0A0E0ABP1	Epimerase domain-containing protein.	ABC transporter domain-containing protein.	0.448
A0A0D9Y2Q7	A0A0E0BCW7	Epimerase domain-containing protein.	Uncharacterized protein.	0.554
A0A0D9Y2Q7	A0A0E0BCW8	Epimerase domain-containing protein.	Uncharacterized protein.	0.554
A0A0D9Y2Q7	A0A0E0BCW9	Epimerase domain-containing protein.	Uncharacterized protein.	0.554
A0A0D9Y2Q7	A0A0E0BEY2	Epimerase domain-containing protein.	Uncharacterized protein.	0.426
A0A0D9Y2Q7	A0A0E0BNH3	Epimerase domain-containing protein.	Uncharacterized protein.	0.426
A0A0D9Y7L1	A0A0D9YS36	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein.	0.521
A0A0D9Y7L1	A0A0D9ZKH8	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein.	0.963
A0A0D9Y7L1	A0A0D9ZZV5	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein.	0.941
A0A0D9YS36	A0A0D9Y7L1	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.521
A0A0D9YS36	A0A0D9YTZ0	Uncharacterized protein.	Uncharacterized protein.	0.501
A0A0D9YTZ0	A0A0D9YS36	Uncharacterized protein.	Uncharacterized protein.	0.501
A0A0D9YWU9	A0A0D9Y2Q7	Uncharacterized protein.	Epimerase domain-containing protein.	0.742
A0A0D9YWU9	A0A0D9Z2L6	Uncharacterized protein.	Uncharacterized protein.	0.527