(6 nodes) U2 snRNA binding network (Oryza glumipatula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0A5K1	MPN domain-containing protein. (2308 aa)
	A0A0D9ZUM6	MPN domain-containing protein. (2356 aa)
	A0A0D9YPR1	Uncharacterized protein. (284 aa)
	A0A0D9YM19	CPSF_A domain-containing protein. (1234 aa)
	A0A0E0BRG9	Coilin_N domain-containing protein. (733 aa)
	A0A0E0AH26	CPSF_A domain-containing protein. (1355 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9YM19	A0A0D9YPR1	CPSF_A domain-containing protein.	Uncharacterized protein.	0.987
A0A0D9YM19	A0A0D9ZUM6	CPSF_A domain-containing protein.	MPN domain-containing protein.	0.975
A0A0D9YM19	A0A0E0A5K1	CPSF_A domain-containing protein.	MPN domain-containing protein.	0.975
A0A0D9YPR1	A0A0D9YM19	Uncharacterized protein.	CPSF_A domain-containing protein.	0.987
A0A0D9YPR1	A0A0D9ZUM6	Uncharacterized protein.	MPN domain-containing protein.	0.963
A0A0D9YPR1	A0A0E0A5K1	Uncharacterized protein.	MPN domain-containing protein.	0.963
A0A0D9YPR1	A0A0E0AH26	Uncharacterized protein.	CPSF_A domain-containing protein.	0.987
A0A0D9ZUM6	A0A0D9YM19	MPN domain-containing protein.	CPSF_A domain-containing protein.	0.975
A0A0D9ZUM6	A0A0D9YPR1	MPN domain-containing protein.	Uncharacterized protein.	0.963
A0A0D9ZUM6	A0A0E0AH26	MPN domain-containing protein.	CPSF_A domain-containing protein.	0.975
A0A0E0A5K1	A0A0D9YM19	MPN domain-containing protein.	CPSF_A domain-containing protein.	0.975
A0A0E0A5K1	A0A0D9YPR1	MPN domain-containing protein.	Uncharacterized protein.	0.963
A0A0E0A5K1	A0A0E0AH26	MPN domain-containing protein.	CPSF_A domain-containing protein.	0.975
A0A0E0AH26	A0A0D9YPR1	CPSF_A domain-containing protein.	Uncharacterized protein.	0.987
A0A0E0AH26	A0A0D9ZUM6	CPSF_A domain-containing protein.	MPN domain-containing protein.	0.975
A0A0E0AH26	A0A0E0A5K1	CPSF_A domain-containing protein.	MPN domain-containing protein.	0.975