(52 nodes) SWI/SNF superfamily-type complex network (Oryza glumipatula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9Z783	Uncharacterized protein. (910 aa)
	A0A0D9Z1M7	Bromo domain-containing protein. (662 aa)
	A0A0D9Z0B3	Ubiquitin carboxyl-terminal hydrolase. (331 aa)
	A0A0D9YXL3	Uncharacterized protein. (246 aa)
	A0A0D9YWP3	Uncharacterized protein. (2045 aa)
	A0A0D9YTN5	Uncharacterized protein. (585 aa)
	A0A0D9YTI6	Uncharacterized protein. (339 aa)
	A0A0D9YNN2	Uncharacterized protein. (511 aa)
	A0A0D9YNM4	Uncharacterized protein. (146 aa)
	A0A0D9YNL7	Uncharacterized protein. (1968 aa)
	A0A0D9YNA0	Ubiquitin carboxyl-terminal hydrolase. (445 aa)
	A0A0D9YH09	RuvB-like helicase; Belongs to the RuvB family. (419 aa)
	A0A0D9YCK9	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (985 aa)
	A0A0D9Y590	PWWP domain-containing protein. (388 aa)
	A0A0D9Y459	Uncharacterized protein. (522 aa)
	A0A0D9YMR0	Uncharacterized protein. (236 aa)
	A0A0E0BRB6	Uncharacterized protein. (1373 aa)
	A0A0E0BPQ8	Uncharacterized protein. (820 aa)
	A0A0E0BPK2	Uncharacterized protein. (233 aa)
	A0A0E0BG38	Uncharacterized protein. (895 aa)
	A0A0E0BFB4	Uncharacterized protein. (390 aa)
	A0A0E0BFB3	Uncharacterized protein. (1884 aa)
	A0A0E0B6U6	Uncharacterized protein. (234 aa)
	A0A0E0B6T1	CBFD_NFYB_HMF domain-containing protein. (167 aa)
	A0A0E0B663	Bromo domain-containing protein. (564 aa)
	A0A0E0B323	Uncharacterized protein. (200 aa)
	A0A0E0AX69	Uncharacterized protein. (558 aa)
	A0A0E0AT31	Uncharacterized protein. (326 aa)
	A0A0E0ART5	YL1_C domain-containing protein. (365 aa)
	A0A0E0ANU9	Uncharacterized protein. (1762 aa)
	A0A0E0ANH3	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (3838 aa)
	A0A0E0AMJ6	BAF250_C domain-containing protein. (460 aa)
	A0A0E0ALW1	RuvB-like helicase; Belongs to the RuvB family. (333 aa)
	A0A0E0AKG7	Bromo domain-containing protein. (995 aa)
	A0A0E0AJA6	Uncharacterized protein. (929 aa)
	A0A0E0AGU9	DDT domain-containing protein. (633 aa)
	A0A0E0AGS1	FHA domain-containing protein. (919 aa)
	A0A0E0AGG7	RuvB-like helicase; Belongs to the RuvB family. (543 aa)
	A0A0E0A610	RuvB-like helicase; Belongs to the RuvB family. (477 aa)
	A0A0E0A2S4	Uncharacterized protein. (1850 aa)
	A0A0E0A262	SANT domain-containing protein. (462 aa)
	A0A0D9ZTH5	Uncharacterized protein. (1268 aa)
	A0A0D9ZT65	Uncharacterized protein. (405 aa)
	A0A0D9ZL36	Uncharacterized protein. (527 aa)
	A0A0D9ZK06	Uncharacterized protein. (154 aa)
	A0A0D9ZJV6	SWIB domain-containing protein. (463 aa)
	A0A0D9ZH32	Uncharacterized protein; Belongs to the actin family. (706 aa)
	A0A0D9ZEL5	Uncharacterized protein. (680 aa)
	A0A0D9ZEJ3	FHA domain-containing protein. (857 aa)
	A0A0D9Z7U8	HIT-type domain-containing protein. (220 aa)
	A0A0D9Z7T4	Uncharacterized protein. (109 aa)
	A0A0D9Z7E7	Uncharacterized protein. (1457 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9Y459	A0A0D9ZEL5	Uncharacterized protein.	Uncharacterized protein.	0.482
A0A0D9Y459	A0A0E0AGU9	Uncharacterized protein.	DDT domain-containing protein.	0.464
A0A0D9Y459	A0A0E0ANH3	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.553
A0A0D9Y590	A0A0D9YWP3	PWWP domain-containing protein.	Uncharacterized protein.	0.496
A0A0D9Y590	A0A0E0A2S4	PWWP domain-containing protein.	Uncharacterized protein.	0.425
A0A0D9Y590	A0A0E0ANU9	PWWP domain-containing protein.	Uncharacterized protein.	0.569
A0A0D9YCK9	A0A0D9YWP3	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	Uncharacterized protein.	0.496
A0A0D9YCK9	A0A0E0A2S4	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	Uncharacterized protein.	0.425
A0A0D9YCK9	A0A0E0ANU9	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	Uncharacterized protein.	0.569
A0A0D9YH09	A0A0D9YNA0	RuvB-like helicase; Belongs to the RuvB family.	Ubiquitin carboxyl-terminal hydrolase.	0.887
A0A0D9YH09	A0A0D9YNL7	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein.	0.460
A0A0D9YH09	A0A0D9YTI6	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein.	0.437
A0A0D9YH09	A0A0D9YWP3	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein.	0.982
A0A0D9YH09	A0A0D9Z0B3	RuvB-like helicase; Belongs to the RuvB family.	Ubiquitin carboxyl-terminal hydrolase.	0.887
A0A0D9YH09	A0A0D9Z7E7	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein.	0.978
A0A0D9YH09	A0A0D9Z7T4	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein.	0.932
A0A0D9YH09	A0A0D9Z7U8	RuvB-like helicase; Belongs to the RuvB family.	HIT-type domain-containing protein.	0.932
A0A0D9YH09	A0A0D9ZEJ3	RuvB-like helicase; Belongs to the RuvB family.	FHA domain-containing protein.	0.797
A0A0D9YH09	A0A0D9ZH32	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein; Belongs to the actin family.	0.985
A0A0D9YH09	A0A0D9ZK06	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein.	0.779