(24 nodes) U2-type prespliceosome network (Oryza glumipatula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0BM77	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (539 aa)
	A0A0D9YPT8	Uncharacterized protein. (793 aa)
	A0A0D9YQ66	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (228 aa)
	A0A0D9YSB0	SF3b1 domain-containing protein. (1235 aa)
	A0A0D9YUN7	Uncharacterized protein. (493 aa)
	A0A0D9Z1U0	Uncharacterized protein. (972 aa)
	A0A0D9Z3S6	Uncharacterized protein. (785 aa)
	A0A0D9Z3X9	Uncharacterized protein. (934 aa)
	A0A0D9Z3Y0	Uncharacterized protein. (61 aa)
	A0A0D9Z513	Matrin-type domain-containing protein. (352 aa)
	A0A0D9Z8T2	Small nuclear ribonucleoprotein G. (80 aa)
	A0A0D9ZD03	DUF3700 domain-containing protein. (251 aa)
	A0A0D9ZFN3	Uncharacterized protein. (421 aa)
	A0A0D9ZSI3	DUF3700 domain-containing protein. (258 aa)
	A0A0E0AC02	Uncharacterized protein. (186 aa)
	A0A0E0AG66	Sm domain-containing protein. (296 aa)
	A0A0E0AMJ1	Small nuclear ribonucleoprotein G. (80 aa)
	A0A0E0AUW9	Uncharacterized protein. (972 aa)
	A0A0E0B773	RRM domain-containing protein. (470 aa)
	A0A0E0BLH0	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (580 aa)
	A0A0D9Y4M8	Uncharacterized protein. (348 aa)
	A0A0D9YA09	Uncharacterized protein. (952 aa)
	A0A0D9YM79	Uncharacterized protein. (638 aa)
	A0A0D9YM89	TOG domain-containing protein. (1601 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9Y4M8	A0A0D9YA09	Uncharacterized protein.	Uncharacterized protein.	0.879
A0A0D9Y4M8	A0A0D9YM79	Uncharacterized protein.	Uncharacterized protein.	0.812
A0A0D9Y4M8	A0A0D9YM89	Uncharacterized protein.	TOG domain-containing protein.	0.812
A0A0D9Y4M8	A0A0D9YPT8	Uncharacterized protein.	Uncharacterized protein.	0.588
A0A0D9Y4M8	A0A0D9YQ66	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.963
A0A0D9Y4M8	A0A0D9YSB0	Uncharacterized protein.	SF3b1 domain-containing protein.	0.812
A0A0D9Y4M8	A0A0D9YUN7	Uncharacterized protein.	Uncharacterized protein.	0.408
A0A0D9Y4M8	A0A0D9Z1U0	Uncharacterized protein.	Uncharacterized protein.	0.590
A0A0D9Y4M8	A0A0D9Z3S6	Uncharacterized protein.	Uncharacterized protein.	0.872
A0A0D9Y4M8	A0A0D9Z3X9	Uncharacterized protein.	Uncharacterized protein.	0.588
A0A0D9Y4M8	A0A0D9Z3Y0	Uncharacterized protein.	Uncharacterized protein.	0.588
A0A0D9Y4M8	A0A0D9Z513	Uncharacterized protein.	Matrin-type domain-containing protein.	0.728
A0A0D9Y4M8	A0A0D9Z8T2	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.819
A0A0D9Y4M8	A0A0D9ZD03	Uncharacterized protein.	DUF3700 domain-containing protein.	0.597
A0A0D9Y4M8	A0A0D9ZFN3	Uncharacterized protein.	Uncharacterized protein.	0.409
A0A0D9Y4M8	A0A0D9ZSI3	Uncharacterized protein.	DUF3700 domain-containing protein.	0.597
A0A0D9Y4M8	A0A0E0AC02	Uncharacterized protein.	Uncharacterized protein.	0.812
A0A0D9Y4M8	A0A0E0AG66	Uncharacterized protein.	Sm domain-containing protein.	0.940
A0A0D9Y4M8	A0A0E0AMJ1	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.819
A0A0D9Y4M8	A0A0E0AUW9	Uncharacterized protein.	Uncharacterized protein.	0.872