(36 nodes) Regulation of response to DNA damage stimulus network (Oryza glumipatula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9YB74	Helicase ATP-binding domain-containing protein. (916 aa)
	A0A0D9YAB9	Morc6_S5 domain-containing protein. (690 aa)
	A0A0D9Y376	Uncharacterized protein. (700 aa)
	A0A0D9Y373	Uncharacterized protein. (461 aa)
	A0A0D9Y262	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2615 aa)
	A0A0E0BIU6	Morc6_S5 domain-containing protein. (704 aa)
	A0A0D9ZS56	Uncharacterized protein. (197 aa)
	A0A0D9ZTH5	Uncharacterized protein. (1268 aa)
	A0A0D9ZUD8	Uncharacterized protein. (617 aa)
	A0A0E0A405	Uncharacterized protein. (299 aa)
	A0A0E0A4I3	Uncharacterized protein. (438 aa)
	A0A0E0A529	Uncharacterized protein. (286 aa)
	A0A0E0A9N9	Morc6_S5 domain-containing protein. (811 aa)
	A0A0E0AF56	XH domain-containing protein. (264 aa)
	A0A0E0AKK8	Uncharacterized protein. (662 aa)
	A0A0E0ATA2	WD_REPEATS_REGION domain-containing protein. (457 aa)
	A0A0E0ATA4	WD_REPEATS_REGION domain-containing protein. (449 aa)
	A0A0E0B6L4	Uncharacterized protein. (436 aa)
	A0A0E0B8H2	Morc6_S5 domain-containing protein. (614 aa)
	A0A0E0BHD5	Uncharacterized protein. (377 aa)
	A0A0D9ZS55	Uncharacterized protein. (183 aa)
	A0A0E0BSD8	Uncharacterized protein. (675 aa)
	A0A0E0BUC0	XH domain-containing protein. (329 aa)
	A0A0D9YZU3	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (263 aa)
	A0A0D9YS38	Morc6_S5 domain-containing protein. (793 aa)
	A0A0D9YQM7	Uncharacterized protein. (628 aa)
	A0A0D9YJE8	DEK_C domain-containing protein. (512 aa)
	A0A0D9YC37	Uncharacterized protein. (629 aa)
	A0A0D9Z8V1	DEK_C domain-containing protein. (654 aa)
	A0A0D9ZA70	Uncharacterized protein. (628 aa)
	A0A0D9ZA72	DEK_C domain-containing protein. (668 aa)
	A0A0D9ZBQ2	Uncharacterized protein. (177 aa)
	A0A0D9ZFN7	Uncharacterized protein. (515 aa)
	A0A0D9ZIU8	Morc6_S5 domain-containing protein. (813 aa)
	A0A0D9ZRS5	Uncharacterized protein. (101 aa)
	A0A0D9Z776	Uncharacterized protein; Belongs to the rad9 family. (447 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9Y262	A0A0D9YB74	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Helicase ATP-binding domain-containing protein.	0.824
A0A0D9Y262	A0A0D9YZU3	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.775
A0A0D9Y262	A0A0D9Z776	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein; Belongs to the rad9 family.	0.981
A0A0D9Y262	A0A0E0A405	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.679
A0A0D9Y262	A0A0E0A529	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.726
A0A0D9Y262	A0A0E0B6L4	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.457
A0A0D9Y262	A0A0E0BHD5	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.457
A0A0D9Y262	A0A0E0BSD8	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.970
A0A0D9YB74	A0A0D9Y262	Helicase ATP-binding domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.824
A0A0D9YB74	A0A0D9YZU3	Helicase ATP-binding domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.918
A0A0D9YB74	A0A0D9Z776	Helicase ATP-binding domain-containing protein.	Uncharacterized protein; Belongs to the rad9 family.	0.735
A0A0D9YB74	A0A0D9ZBQ2	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.468
A0A0D9YB74	A0A0E0A4I3	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.535
A0A0D9YB74	A0A0E0ATA2	Helicase ATP-binding domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.571
A0A0D9YB74	A0A0E0ATA4	Helicase ATP-binding domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.571
A0A0D9YB74	A0A0E0BSD8	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.780
A0A0D9YZU3	A0A0D9Y262	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.775
A0A0D9YZU3	A0A0D9YB74	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Helicase ATP-binding domain-containing protein.	0.918
A0A0D9YZU3	A0A0D9Z776	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein; Belongs to the rad9 family.	0.430
A0A0D9YZU3	A0A0D9ZFN7	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.921