(39 nodes) Transport vesicle membrane network (Oryza glumipatula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9ZEU4	Clat_adaptor_s domain-containing protein. (228 aa)
	A0A0E0AZC0	Uncharacterized protein. (1031 aa)
	A0A0E0AWJ2	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (763 aa)
	A0A0E0AR53	Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. (243 aa)
	A0A0E0ALH7	Bromo domain-containing protein. (849 aa)
	A0A0E0ALH4	SEC7 domain-containing protein. (1709 aa)
	A0A0E0ALH3	Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. (306 aa)
	A0A0E0AIR2	Uncharacterized protein. (388 aa)
	A0A0E0B3D8	Uncharacterized protein. (1903 aa)
	A0A0E0B3X1	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (691 aa)
	A0A0E0BAT7	Protein kinase domain-containing protein. (974 aa)
	A0A0E0BIK6	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (793 aa)
	A0A0E0BJ31	Uncharacterized protein. (927 aa)
	A0A0E0BRZ6	Uncharacterized protein. (1131 aa)
	A0A0E0AG39	DYW_deaminase domain-containing protein. (666 aa)
	A0A0E0AET7	Uncharacterized protein. (339 aa)
	A0A0E0A709	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (194 aa)
	A0A0E0A6B6	Uncharacterized protein; Belongs to the synaptobrevin family. (314 aa)
	A0A0E0A5K2	AP-1 complex subunit gamma. (878 aa)
	A0A0E0A1A8	Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. (221 aa)
	A0A0D9ZZV5	Uncharacterized protein. (769 aa)
	A0A0D9ZQJ7	Vacuolar ATPase assembly integral membrane protein VMA21 homolog; Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum; Belongs to the VMA21 family. (146 aa)
	A0A0D9ZQ30	Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. (273 aa)
	A0A0D9ZP97	SSD domain-containing protein. (1205 aa)
	A0A0D9ZKH8	Uncharacterized protein. (732 aa)
	A0A0D9ZE81	Uncharacterized protein; Belongs to the synaptobrevin family. (254 aa)
	A0A0D9ZDZ7	Clat_adaptor_s domain-containing protein. (270 aa)
	A0A0D9ZCY3	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (762 aa)
	A0A0D9Z9Z2	Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. (221 aa)
	A0A0D9Z9Z1	Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. (309 aa)
	A0A0D9Z2C5	Protein kinase domain-containing protein. (990 aa)
	A0A0D9YZU1	AP-1 complex subunit gamma. (938 aa)
	A0A0D9YPF6	Protein kinase domain-containing protein. (949 aa)
	A0A0D9YJ92	Uncharacterized protein. (432 aa)
	A0A0D9YFT7	Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. (290 aa)
	A0A0D9Y7L1	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (862 aa)
	A0A0D9Y7K9	Protein translocase subunit SecA; Belongs to the SecA family. (999 aa)
	A0A0D9Y665	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (193 aa)
	A0A0D9Y5Q8	Longin domain-containing protein; Belongs to the synaptobrevin family. (271 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9Y5Q8	A0A0D9Y665	Longin domain-containing protein; Belongs to the synaptobrevin family.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.675
A0A0D9Y5Q8	A0A0D9Y7K9	Longin domain-containing protein; Belongs to the synaptobrevin family.	Protein translocase subunit SecA; Belongs to the SecA family.	0.784
A0A0D9Y5Q8	A0A0D9Y7L1	Longin domain-containing protein; Belongs to the synaptobrevin family.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.790
A0A0D9Y5Q8	A0A0D9ZCY3	Longin domain-containing protein; Belongs to the synaptobrevin family.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.784
A0A0D9Y5Q8	A0A0D9ZKH8	Longin domain-containing protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.863
A0A0D9Y5Q8	A0A0D9ZZV5	Longin domain-containing protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.863
A0A0D9Y5Q8	A0A0E0A709	Longin domain-containing protein; Belongs to the synaptobrevin family.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.675
A0A0D9Y5Q8	A0A0E0AWJ2	Longin domain-containing protein; Belongs to the synaptobrevin family.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.784
A0A0D9Y5Q8	A0A0E0AZC0	Longin domain-containing protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.863
A0A0D9Y5Q8	A0A0E0B3X1	Longin domain-containing protein; Belongs to the synaptobrevin family.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.784
A0A0D9Y5Q8	A0A0E0BIK6	Longin domain-containing protein; Belongs to the synaptobrevin family.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.784
A0A0D9Y5Q8	A0A0E0BJ31	Longin domain-containing protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.622
A0A0D9Y5Q8	A0A0E0BRZ6	Longin domain-containing protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.622
A0A0D9Y665	A0A0D9Y5Q8	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	Longin domain-containing protein; Belongs to the synaptobrevin family.	0.675
A0A0D9Y665	A0A0D9Y7K9	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	Protein translocase subunit SecA; Belongs to the SecA family.	0.864
A0A0D9Y665	A0A0D9Y7L1	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.876
A0A0D9Y665	A0A0D9ZCY3	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.886
A0A0D9Y665	A0A0D9ZE81	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.675
A0A0D9Y665	A0A0D9ZKH8	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	Uncharacterized protein.	0.915
A0A0D9Y665	A0A0D9ZZV5	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	Uncharacterized protein.	0.915