(7 nodes) Elongator holoenzyme complex network (Oryza glumipatula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0AJD4	Uncharacterized protein. (682 aa)
	A0A0D9Z3J2	Uncharacterized protein. (387 aa)
	A0A0D9Z5L9	Uncharacterized protein. (333 aa)
	A0A0E0ACC0	Uncharacterized protein. (390 aa)
	A0A0E0BR63	Elp3 domain-containing protein. (467 aa)
	A0A0E0AX08	Uncharacterized protein. (849 aa)
	A0A0E0ALF9	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family. (1339 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9Z3J2	A0A0D9Z5L9	Uncharacterized protein.	Uncharacterized protein.	0.593
A0A0D9Z3J2	A0A0E0ACC0	Uncharacterized protein.	Uncharacterized protein.	0.626
A0A0D9Z3J2	A0A0E0ALF9	Uncharacterized protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.632
A0A0D9Z5L9	A0A0D9Z3J2	Uncharacterized protein.	Uncharacterized protein.	0.593
A0A0D9Z5L9	A0A0E0ACC0	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A0D9Z5L9	A0A0E0ALF9	Uncharacterized protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.763
A0A0D9Z5L9	A0A0E0AX08	Uncharacterized protein.	Uncharacterized protein.	0.487
A0A0D9Z5L9	A0A0E0BR63	Uncharacterized protein.	Elp3 domain-containing protein.	0.685
A0A0E0ACC0	A0A0D9Z3J2	Uncharacterized protein.	Uncharacterized protein.	0.626
A0A0E0ACC0	A0A0D9Z5L9	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A0E0ACC0	A0A0E0ALF9	Uncharacterized protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.991
A0A0E0ACC0	A0A0E0AX08	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A0E0ACC0	A0A0E0BR63	Uncharacterized protein.	Elp3 domain-containing protein.	0.978
A0A0E0ALF9	A0A0D9Z3J2	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Uncharacterized protein.	0.632
A0A0E0ALF9	A0A0D9Z5L9	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Uncharacterized protein.	0.763
A0A0E0ALF9	A0A0E0ACC0	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Uncharacterized protein.	0.991
A0A0E0ALF9	A0A0E0AX08	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Uncharacterized protein.	0.985
A0A0E0ALF9	A0A0E0BR63	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Elp3 domain-containing protein.	0.986
A0A0E0AX08	A0A0D9Z5L9	Uncharacterized protein.	Uncharacterized protein.	0.487
A0A0E0AX08	A0A0E0ACC0	Uncharacterized protein.	Uncharacterized protein.	0.982