(25 nodes) SAGA-type complex network (Oryza glumipatula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0AMK7	Uncharacterized protein. (425 aa)
	A0A0E0AMQ1	Uncharacterized protein. (96 aa)
	A0A0E0ANH3	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (3838 aa)
	A0A0E0B3B0	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. (164 aa)
	A0A0E0BA02	Uncharacterized protein. (1271 aa)
	A0A0E0BRI6	SGF29 C-terminal domain-containing protein. (294 aa)
	A0A0E0BUI2	Uncharacterized protein. (373 aa)
	A0A0D9Y2H6	Uncharacterized protein. (1029 aa)
	A0A0D9Y5C0	Uncharacterized protein. (524 aa)
	A0A0D9Y6E4	Uncharacterized protein. (668 aa)
	A0A0D9Y7Z6	Uncharacterized protein. (315 aa)
	A0A0D9Y9E9	TAF domain-containing protein. (539 aa)
	A0A0D9YEN9	Uncharacterized protein. (495 aa)
	A0A0D9YH96	TFIID_20kDa domain-containing protein. (543 aa)
	A0A0D9YLT0	Uncharacterized protein. (269 aa)
	A0A0D9YWB2	Uncharacterized protein. (488 aa)
	A0A0D9YWB3	Uncharacterized protein. (428 aa)
	A0A0D9Z8R8	Uncharacterized protein. (178 aa)
	A0A0D9ZDJ4	Uncharacterized protein. (303 aa)
	A0A0D9ZIE8	Uncharacterized protein. (384 aa)
	A0A0D9ZKM0	Uncharacterized protein. (455 aa)
	A0A0D9ZPE1	Uncharacterized protein. (510 aa)
	A0A0D9ZRK7	Ubiquitinyl hydrolase 1. (562 aa)
	A0A0D9ZRU9	Uncharacterized protein. (426 aa)
	A0A0D9ZXV3	SAGA-associated factor 11. (208 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9Y2H6	A0A0E0BA02	Uncharacterized protein.	Uncharacterized protein.	0.441
A0A0D9Y5C0	A0A0D9Y9E9	Uncharacterized protein.	TAF domain-containing protein.	0.721
A0A0D9Y5C0	A0A0D9YH96	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.660
A0A0D9Y5C0	A0A0D9Z8R8	Uncharacterized protein.	Uncharacterized protein.	0.682
A0A0D9Y5C0	A0A0D9ZRK7	Uncharacterized protein.	Ubiquitinyl hydrolase 1.	0.671
A0A0D9Y5C0	A0A0D9ZXV3	Uncharacterized protein.	SAGA-associated factor 11.	0.803
A0A0D9Y5C0	A0A0E0AMK7	Uncharacterized protein.	Uncharacterized protein.	0.682
A0A0D9Y5C0	A0A0E0AMQ1	Uncharacterized protein.	Uncharacterized protein.	0.708
A0A0D9Y5C0	A0A0E0ANH3	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.708
A0A0D9Y5C0	A0A0E0B3B0	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	0.790
A0A0D9Y5C0	A0A0E0BRI6	Uncharacterized protein.	SGF29 C-terminal domain-containing protein.	0.693
A0A0D9Y6E4	A0A0D9Y9E9	Uncharacterized protein.	TAF domain-containing protein.	0.721
A0A0D9Y6E4	A0A0D9YH96	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.660
A0A0D9Y6E4	A0A0D9Z8R8	Uncharacterized protein.	Uncharacterized protein.	0.682
A0A0D9Y6E4	A0A0D9ZRK7	Uncharacterized protein.	Ubiquitinyl hydrolase 1.	0.671
A0A0D9Y6E4	A0A0D9ZXV3	Uncharacterized protein.	SAGA-associated factor 11.	0.803
A0A0D9Y6E4	A0A0E0AMK7	Uncharacterized protein.	Uncharacterized protein.	0.682
A0A0D9Y6E4	A0A0E0AMQ1	Uncharacterized protein.	Uncharacterized protein.	0.708
A0A0D9Y6E4	A0A0E0ANH3	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.708
A0A0D9Y6E4	A0A0E0B3B0	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	0.790