(7 nodes) Zinc finger, HIT-type network (Oryza glumipatula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9ZEU6	PAPA-1 domain-containing protein. (506 aa)
	A0A0D9YNW8	Uncharacterized protein. (640 aa)
	A0A0D9YKD8	HIT-type domain-containing protein. (552 aa)
	A0A0D9Z7U8	HIT-type domain-containing protein. (220 aa)
	A0A0D9YGT5	HIT-type domain-containing protein. (156 aa)
	A0A0E0BU28	PAPA-1 domain-containing protein. (579 aa)
	A0A0E0BCS8	HIT-type domain-containing protein. (419 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9YGT5	A0A0D9YKD8	HIT-type domain-containing protein.	HIT-type domain-containing protein.	0.575
A0A0D9YGT5	A0A0E0BCS8	HIT-type domain-containing protein.	HIT-type domain-containing protein.	0.489
A0A0D9YKD8	A0A0D9YGT5	HIT-type domain-containing protein.	HIT-type domain-containing protein.	0.575
A0A0D9YKD8	A0A0D9Z7U8	HIT-type domain-containing protein.	HIT-type domain-containing protein.	0.444
A0A0D9YKD8	A0A0E0BCS8	HIT-type domain-containing protein.	HIT-type domain-containing protein.	0.542
A0A0D9Z7U8	A0A0D9YKD8	HIT-type domain-containing protein.	HIT-type domain-containing protein.	0.444
A0A0D9ZEU6	A0A0E0BCS8	PAPA-1 domain-containing protein.	HIT-type domain-containing protein.	0.461
A0A0D9ZEU6	A0A0E0BU28	PAPA-1 domain-containing protein.	PAPA-1 domain-containing protein.	0.459
A0A0E0BCS8	A0A0D9YGT5	HIT-type domain-containing protein.	HIT-type domain-containing protein.	0.489
A0A0E0BCS8	A0A0D9YKD8	HIT-type domain-containing protein.	HIT-type domain-containing protein.	0.542
A0A0E0BCS8	A0A0D9ZEU6	HIT-type domain-containing protein.	PAPA-1 domain-containing protein.	0.461
A0A0E0BU28	A0A0D9ZEU6	PAPA-1 domain-containing protein.	PAPA-1 domain-containing protein.	0.459