(44 nodes) Recognition of DNA damage by PCNA-containing replication complex network (Oryza glumipatula)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	A0A0D9YB14	CPSF_A domain-containing protein. (207 aa)
	A0A0D9Y343	Uncharacterized protein. (151 aa)
	A0A0E0BKF3	Replication factor C subunit 1. (1125 aa)
	A0A0E0BH83	DNA_pol3_gamma3 domain-containing protein. (1104 aa)
	A0A0E0BEG0	Uncharacterized protein. (527 aa)
	A0A0E0BE43	Uncharacterized protein. (667 aa)
	A0A0E0BC36	Ubiquitin-like domain-containing protein. (172 aa)
	A0A0D9YEJ9	DNA_pol3_gamma3 domain-containing protein. (1022 aa)
	A0A0D9YSR4	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2156 aa)
	A0A0D9YV55	NAC domain-containing protein. (294 aa)
	A0A0E0BBQ3	NAC domain-containing protein. (324 aa)
	A0A0E0BAH1	NAC domain-containing protein. (543 aa)
	A0A0E0B6T1	CBFD_NFYB_HMF domain-containing protein. (167 aa)
	A0A0E0B5F3	Uncharacterized protein. (131 aa)
	A0A0E0B4J6	Ubiquitin-like domain-containing protein. (97 aa)
	A0A0E0AYF1	Uncharacterized protein. (138 aa)
	A0A0E0AR75	Uncharacterized protein. (151 aa)
	A0A0E0AR20	NAC domain-containing protein. (732 aa)
	A0A0E0ADD6	Ubiquitin-like domain-containing protein. (64 aa)
	A0A0E0A3S2	NAC domain-containing protein. (679 aa)
	A0A0E0A3L7	CPSF_A domain-containing protein. (1090 aa)
	A0A0E0A1X3	DNA_pol3_gamma3 domain-containing protein. (1083 aa)
	A0A0E0A0T3	Uncharacterized protein. (427 aa)
	A0A0E0A0T2	Uncharacterized protein. (210 aa)
	A0A0D9ZTC0	Uncharacterized protein. (171 aa)
	A0A0D9ZPF7	AAA domain-containing protein. (335 aa)
	A0A0D9ZN59	NAC domain-containing protein. (278 aa)
	A0A0D9ZE97	AAA domain-containing protein. (354 aa)
	A0A0D9ZE42	CULLIN_2 domain-containing protein; Belongs to the cullin family. (808 aa)
	A0A0D9ZC07	WD_REPEATS_REGION domain-containing protein. (499 aa)
	A0A0D9Z502	AAA domain-containing protein. (1233 aa)
	A0A0D9Z1Y7	Uncharacterized protein. (979 aa)
	A0A0D9YZ51	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (672 aa)
	A0A0D9YZ39	AAA domain-containing protein. (361 aa)
	A0A0D9YX30	Uncharacterized protein. (1026 aa)
	A0A0E0AQ91	AAA domain-containing protein. (733 aa)
	A0A0E0BT68	Uncharacterized protein. (247 aa)
	A0A0D9YZU3	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (263 aa)
	A0A0D9YZZ2	NAC domain-containing protein. (332 aa)
	A0A0D9Z0Z5	NAC domain-containing protein. (295 aa)
	A0A0E0BRH4	AAA domain-containing protein. (971 aa)
	A0A0E0BQD5	DNA_pol3_gamma3 domain-containing protein. (1174 aa)
	A0A0E0BPQ7	AAA domain-containing protein. (339 aa)
	A0A0E0BPF5	WD_REPEATS_REGION domain-containing protein. (714 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9Y343	A0A0D9YB14	Uncharacterized protein.	CPSF_A domain-containing protein.	0.515
A0A0D9Y343	A0A0D9YEJ9	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.578
A0A0D9Y343	A0A0D9YSR4	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.726
A0A0D9Y343	A0A0D9YX30	Uncharacterized protein.	Uncharacterized protein.	0.698
A0A0D9Y343	A0A0D9YZ39	Uncharacterized protein.	AAA domain-containing protein.	0.712
A0A0D9Y343	A0A0D9YZU3	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.867
A0A0D9Y343	A0A0D9Z1Y7	Uncharacterized protein.	Uncharacterized protein.	0.510
A0A0D9Y343	A0A0D9Z502	Uncharacterized protein.	AAA domain-containing protein.	0.747
A0A0D9Y343	A0A0D9ZC07	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.533
A0A0D9Y343	A0A0D9ZE97	Uncharacterized protein.	AAA domain-containing protein.	0.698
A0A0D9Y343	A0A0D9ZPF7	Uncharacterized protein.	AAA domain-containing protein.	0.726
A0A0D9Y343	A0A0E0A1X3	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.578
A0A0D9Y343	A0A0E0A3L7	Uncharacterized protein.	CPSF_A domain-containing protein.	0.515
A0A0D9Y343	A0A0E0ADD6	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.517
A0A0D9Y343	A0A0E0AQ91	Uncharacterized protein.	AAA domain-containing protein.	0.578
A0A0D9Y343	A0A0E0B4J6	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.517
A0A0D9Y343	A0A0E0B6T1	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.567
A0A0D9Y343	A0A0E0BC36	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.517
A0A0D9Y343	A0A0E0BE43	Uncharacterized protein.	Uncharacterized protein.	0.698
A0A0D9Y343	A0A0E0BH83	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.578