(19 nodes) Toll Like Receptor TLR6:TLR2 Cascade network (Oryza glumipatula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D9YPC2	Serine/threonine-protein phosphatase. (307 aa)
	A0A0D9YZ05	Uncharacterized protein. (204 aa)
	A0A0E0BRX1	PsaL domain-containing protein. (201 aa)
	A0A0E0BRW8	Uncharacterized protein. (290 aa)
	A0A0E0BC36	Ubiquitin-like domain-containing protein. (172 aa)
	A0A0E0BAD2	Serine/threonine-protein phosphatase. (284 aa)
	A0A0E0B4J6	Ubiquitin-like domain-containing protein. (97 aa)
	A0A0E0B034	Uncharacterized protein. (587 aa)
	A0A0E0ARP9	TMEM189_B_dmain domain-containing protein. (87 aa)
	A0A0E0ADD6	Ubiquitin-like domain-containing protein. (64 aa)
	A0A0E0ABA2	SER_THR_PHOSPHATASE domain-containing protein. (161 aa)
	A0A0E0A9T4	Uncharacterized protein. (193 aa)
	A0A0E0A8H9	Uncharacterized protein. (880 aa)
	A0A0E0A7A7	Uncharacterized protein. (614 aa)
	A0A0E0A6K3	Uncharacterized protein. (224 aa)
	A0A0D9Z2K2	Serine/threonine-protein phosphatase. (314 aa)
	A0A0D9ZD83	COR domain-containing protein. (1342 aa)
	A0A0D9Y9J2	Uncharacterized protein. (2205 aa)
	A0A0D9ZEN9	Serine/threonine-protein phosphatase. (363 aa)

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9Y9J2	A0A0D9YPC2	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.934
A0A0D9Y9J2	A0A0D9Z2K2	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.934
A0A0D9Y9J2	A0A0D9ZEN9	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.934
A0A0D9Y9J2	A0A0E0ABA2	Uncharacterized protein.	SER_THR_PHOSPHATASE domain-containing protein.	0.934
A0A0D9Y9J2	A0A0E0ADD6	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.576
A0A0D9Y9J2	A0A0E0B4J6	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.576
A0A0D9Y9J2	A0A0E0BAD2	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.934
A0A0D9Y9J2	A0A0E0BC36	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.576
A0A0D9YPC2	A0A0D9Y9J2	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.934
A0A0D9YPC2	A0A0D9Z2K2	Serine/threonine-protein phosphatase.	Serine/threonine-protein phosphatase.	0.853
A0A0D9YPC2	A0A0D9ZEN9	Serine/threonine-protein phosphatase.	Serine/threonine-protein phosphatase.	0.902
A0A0D9YPC2	A0A0E0A8H9	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.934
A0A0D9YPC2	A0A0E0ADD6	Serine/threonine-protein phosphatase.	Ubiquitin-like domain-containing protein.	0.577
A0A0D9YPC2	A0A0E0B034	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.976
A0A0D9YPC2	A0A0E0B4J6	Serine/threonine-protein phosphatase.	Ubiquitin-like domain-containing protein.	0.577
A0A0D9YPC2	A0A0E0BAD2	Serine/threonine-protein phosphatase.	Serine/threonine-protein phosphatase.	0.853
A0A0D9YPC2	A0A0E0BC36	Serine/threonine-protein phosphatase.	Ubiquitin-like domain-containing protein.	0.577
A0A0D9Z2K2	A0A0D9Y9J2	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.934
A0A0D9Z2K2	A0A0D9YPC2	Serine/threonine-protein phosphatase.	Serine/threonine-protein phosphatase.	0.853
A0A0D9Z2K2	A0A0D9ZEN9	Serine/threonine-protein phosphatase.	Serine/threonine-protein phosphatase.	0.845