10 items (Oryza meridionalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0C0T1	PCI domain-containing protein. (475 aa)
	A0A0E0CQF6	RING-type domain-containing protein. (114 aa)
	A0A0E0CU56	PCI domain-containing protein. (441 aa)
	A0A0E0CWP0	PCI domain-containing protein. (383 aa)
	A0A0E0D0Y7	Ubiquitin-like domain-containing protein. (165 aa)
	A0A0E0DE06	PCI domain-containing protein. (246 aa)
	A0A0E0DE92	Uncharacterized protein. (218 aa)
	A0A0E0DJC2	MPN domain-containing protein. (385 aa)
	A0A0E0EN29	MPN domain-containing protein. (331 aa)
	A0A0E0EZP4	JAB_MPN domain-containing protein. (455 aa)

Your Current Organism:

Oryza meridionalis

NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0C0T1	A0A0E0CQF6	PCI domain-containing protein.	RING-type domain-containing protein.	0.975
A0A0E0C0T1	A0A0E0CU56	PCI domain-containing protein.	PCI domain-containing protein.	0.999
A0A0E0C0T1	A0A0E0CWP0	PCI domain-containing protein.	PCI domain-containing protein.	0.999
A0A0E0C0T1	A0A0E0D0Y7	PCI domain-containing protein.	Ubiquitin-like domain-containing protein.	0.893
A0A0E0C0T1	A0A0E0DE06	PCI domain-containing protein.	PCI domain-containing protein.	0.995
A0A0E0C0T1	A0A0E0DE92	PCI domain-containing protein.	Uncharacterized protein.	0.999
A0A0E0C0T1	A0A0E0DJC2	PCI domain-containing protein.	MPN domain-containing protein.	0.999
A0A0E0C0T1	A0A0E0EN29	PCI domain-containing protein.	MPN domain-containing protein.	0.973
A0A0E0C0T1	A0A0E0EZP4	PCI domain-containing protein.	JAB_MPN domain-containing protein.	0.973
A0A0E0CQF6	A0A0E0C0T1	RING-type domain-containing protein.	PCI domain-containing protein.	0.975
A0A0E0CQF6	A0A0E0CU56	RING-type domain-containing protein.	PCI domain-containing protein.	0.981
A0A0E0CQF6	A0A0E0CWP0	RING-type domain-containing protein.	PCI domain-containing protein.	0.980
A0A0E0CQF6	A0A0E0D0Y7	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.996
A0A0E0CQF6	A0A0E0DE06	RING-type domain-containing protein.	PCI domain-containing protein.	0.947
A0A0E0CQF6	A0A0E0DE92	RING-type domain-containing protein.	Uncharacterized protein.	0.968
A0A0E0CQF6	A0A0E0DJC2	RING-type domain-containing protein.	MPN domain-containing protein.	0.976
A0A0E0CQF6	A0A0E0EN29	RING-type domain-containing protein.	MPN domain-containing protein.	0.939
A0A0E0CQF6	A0A0E0EZP4	RING-type domain-containing protein.	JAB_MPN domain-containing protein.	0.939
A0A0E0CU56	A0A0E0C0T1	PCI domain-containing protein.	PCI domain-containing protein.	0.999
A0A0E0CU56	A0A0E0CQF6	PCI domain-containing protein.	RING-type domain-containing protein.	0.981