17 items (Oryza meridionalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0CMU9	Uncharacterized protein. (269 aa)
	A0A0E0FE18	Uncharacterized protein. (178 aa)
	A0A0E0F5B3	Uncharacterized protein. (221 aa)
	A0A0E0EYV9	Uncharacterized protein. (212 aa)
	A0A0E0EUQ1	Uncharacterized protein. (251 aa)
	A0A0E0EI65	Uncharacterized protein. (143 aa)
	A0A0E0EHH0	Uncharacterized protein. (147 aa)
	A0A0E0EB70	Uncharacterized protein. (229 aa)
	A0A0E0E487	Uncharacterized protein. (205 aa)
	A0A0E0DE07	Uncharacterized protein. (91 aa)
	A0A0E0D6K2	Uncharacterized protein. (181 aa)
	A0A0E0D406	Uncharacterized protein. (186 aa)
	A0A0E0CTW9	Uncharacterized protein. (194 aa)
	A0A0E0CTT2	Uncharacterized protein. (241 aa)
	A0A0E0CLN7	Uncharacterized protein. (68 aa)
	A0A0E0CL04	Uncharacterized protein. (237 aa)
	A0A0E0C313	Uncharacterized protein. (133 aa)

Your Current Organism:

Oryza meridionalis

NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0C313	A0A0E0CMU9	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A0E0C313	A0A0E0CTT2	Uncharacterized protein.	Uncharacterized protein.	0.925
A0A0E0C313	A0A0E0D6K2	Uncharacterized protein.	Uncharacterized protein.	0.433
A0A0E0C313	A0A0E0DE07	Uncharacterized protein.	Uncharacterized protein.	0.823
A0A0E0C313	A0A0E0E487	Uncharacterized protein.	Uncharacterized protein.	0.963
A0A0E0C313	A0A0E0EB70	Uncharacterized protein.	Uncharacterized protein.	0.925
A0A0E0C313	A0A0E0EUQ1	Uncharacterized protein.	Uncharacterized protein.	0.433
A0A0E0C313	A0A0E0F5B3	Uncharacterized protein.	Uncharacterized protein.	0.433
A0A0E0CL04	A0A0E0CMU9	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A0E0CL04	A0A0E0CTT2	Uncharacterized protein.	Uncharacterized protein.	0.925
A0A0E0CL04	A0A0E0D6K2	Uncharacterized protein.	Uncharacterized protein.	0.433
A0A0E0CL04	A0A0E0DE07	Uncharacterized protein.	Uncharacterized protein.	0.823
A0A0E0CL04	A0A0E0E487	Uncharacterized protein.	Uncharacterized protein.	0.963
A0A0E0CL04	A0A0E0EB70	Uncharacterized protein.	Uncharacterized protein.	0.925
A0A0E0CL04	A0A0E0EUQ1	Uncharacterized protein.	Uncharacterized protein.	0.433
A0A0E0CL04	A0A0E0F5B3	Uncharacterized protein.	Uncharacterized protein.	0.433
A0A0E0CLN7	A0A0E0CMU9	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A0E0CLN7	A0A0E0CTT2	Uncharacterized protein.	Uncharacterized protein.	0.925
A0A0E0CLN7	A0A0E0D6K2	Uncharacterized protein.	Uncharacterized protein.	0.433
A0A0E0CLN7	A0A0E0DE07	Uncharacterized protein.	Uncharacterized protein.	0.823