16 items (Oryza meridionalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0DCR5	Uncharacterized protein. (305 aa)
	A0A0E0DJJ7	S4 RNA-binding domain-containing protein. (157 aa)
	A0A0E0CHN0	Uncharacterized protein. (711 aa)
	A0A0E0CQZ6	RRP7 domain-containing protein. (366 aa)
	A0A0E0DU09	WD_REPEATS_REGION domain-containing protein. (888 aa)
	A0A0E0DWD8	Brix domain-containing protein. (449 aa)
	A0A0E0E8X2	Uncharacterized protein. (1939 aa)
	A0A0E0EP80	Uncharacterized protein; Belongs to the carbohydrate kinase PfkB family. (452 aa)
	A0A0E0EZF6	Uncharacterized protein. (768 aa)
	A0A0E0F2A9	Uncharacterized protein. (425 aa)
	A0A0E0F2F7	Uncharacterized protein. (441 aa)
	A0A0E0F9R0	Uncharacterized protein. (669 aa)
	A0A0E0F9V8	Uncharacterized protein. (865 aa)
	A0A0E0CVA4	WD_REPEATS_REGION domain-containing protein. (940 aa)
	A0A0E0D3J6	Uncharacterized protein. (950 aa)
	A0A0E0D688	WD_REPEATS_REGION domain-containing protein. (816 aa)

Your Current Organism:

Oryza meridionalis

NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0CHN0	A0A0E0CQZ6	Uncharacterized protein.	RRP7 domain-containing protein.	0.999
A0A0E0CHN0	A0A0E0CVA4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A0E0CHN0	A0A0E0D3J6	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A0E0CHN0	A0A0E0D688	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A0E0CHN0	A0A0E0DCR5	Uncharacterized protein.	Uncharacterized protein.	0.431
A0A0E0CHN0	A0A0E0DJJ7	Uncharacterized protein.	S4 RNA-binding domain-containing protein.	0.998
A0A0E0CHN0	A0A0E0DU09	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A0E0CHN0	A0A0E0DWD8	Uncharacterized protein.	Brix domain-containing protein.	0.891
A0A0E0CHN0	A0A0E0E8X2	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A0E0CHN0	A0A0E0EZF6	Uncharacterized protein.	Uncharacterized protein.	0.886
A0A0E0CHN0	A0A0E0F2A9	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A0E0CHN0	A0A0E0F2F7	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A0E0CHN0	A0A0E0F9R0	Uncharacterized protein.	Uncharacterized protein.	0.886
A0A0E0CHN0	A0A0E0F9V8	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0E0CQZ6	A0A0E0CHN0	RRP7 domain-containing protein.	Uncharacterized protein.	0.999
A0A0E0CQZ6	A0A0E0CVA4	RRP7 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.995
A0A0E0CQZ6	A0A0E0D3J6	RRP7 domain-containing protein.	Uncharacterized protein.	0.998
A0A0E0CQZ6	A0A0E0D688	RRP7 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.997
A0A0E0CQZ6	A0A0E0DJJ7	RRP7 domain-containing protein.	S4 RNA-binding domain-containing protein.	0.998
A0A0E0CQZ6	A0A0E0DU09	RRP7 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.996