11 items (Oryza meridionalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0EB70	Uncharacterized protein. (229 aa)
	A0A0E0E487	Uncharacterized protein. (205 aa)
	A0A0E0E3S2	Uncharacterized protein. (299 aa)
	A0A0E0EQ14	Uncharacterized protein. (244 aa)
	A0A0E0EYV9	Uncharacterized protein. (212 aa)
	A0A0E0CMU9	Uncharacterized protein. (269 aa)
	A0A0E0CTT2	Uncharacterized protein. (241 aa)
	A0A0E0CTW9	Uncharacterized protein. (194 aa)
	A0A0E0DE07	Uncharacterized protein. (91 aa)
	A0A0E0DKR9	Uncharacterized protein. (232 aa)
	A0A0E0F913	Uncharacterized protein. (246 aa)

Your Current Organism:

Oryza meridionalis

NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0CMU9	A0A0E0CTT2	Uncharacterized protein.	Uncharacterized protein.	0.984
A0A0E0CMU9	A0A0E0CTW9	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A0E0CMU9	A0A0E0DE07	Uncharacterized protein.	Uncharacterized protein.	0.966
A0A0E0CMU9	A0A0E0DKR9	Uncharacterized protein.	Uncharacterized protein.	0.950
A0A0E0CMU9	A0A0E0E3S2	Uncharacterized protein.	Uncharacterized protein.	0.966
A0A0E0CMU9	A0A0E0E487	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A0E0CMU9	A0A0E0EB70	Uncharacterized protein.	Uncharacterized protein.	0.984
A0A0E0CMU9	A0A0E0EQ14	Uncharacterized protein.	Uncharacterized protein.	0.966
A0A0E0CMU9	A0A0E0EYV9	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A0E0CMU9	A0A0E0F913	Uncharacterized protein.	Uncharacterized protein.	0.966
A0A0E0CTT2	A0A0E0CMU9	Uncharacterized protein.	Uncharacterized protein.	0.984
A0A0E0CTT2	A0A0E0CTW9	Uncharacterized protein.	Uncharacterized protein.	0.925
A0A0E0CTT2	A0A0E0DE07	Uncharacterized protein.	Uncharacterized protein.	0.952
A0A0E0CTT2	A0A0E0DKR9	Uncharacterized protein.	Uncharacterized protein.	0.986
A0A0E0CTT2	A0A0E0E3S2	Uncharacterized protein.	Uncharacterized protein.	0.952
A0A0E0CTT2	A0A0E0E487	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A0E0CTT2	A0A0E0EQ14	Uncharacterized protein.	Uncharacterized protein.	0.952
A0A0E0CTT2	A0A0E0EYV9	Uncharacterized protein.	Uncharacterized protein.	0.925
A0A0E0CTT2	A0A0E0F913	Uncharacterized protein.	Uncharacterized protein.	0.952
A0A0E0CTW9	A0A0E0CMU9	Uncharacterized protein.	Uncharacterized protein.	0.896