(23 nodes) Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily network (Oryza meridionalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0EKV3	Uncharacterized protein. (964 aa)
	A0A0E0FAD3	Uncharacterized protein. (353 aa)
	A0A0E0F9J2	Pyruvate kinase; Belongs to the pyruvate kinase family. (527 aa)
	A0A0E0F3P2	Pyruvate kinase; Belongs to the pyruvate kinase family. (642 aa)
	A0A0E0EU39	Rhodanese domain-containing protein. (566 aa)
	A0A0E0ERU9	PK domain-containing protein. (535 aa)
	A0A0E0DDE0	Uncharacterized protein. (389 aa)
	A0A0E0DFV1	Uncharacterized protein. (497 aa)
	A0A0E0DK60	Pyruvate kinase; Belongs to the pyruvate kinase family. (511 aa)
	A0A0E0DR93	Pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family. (882 aa)
	A0A0E0E204	PEP_hydrolase domain-containing protein. (743 aa)
	A0A0E0E9X3	Pyruvate kinase; Belongs to the pyruvate kinase family. (572 aa)
	A0A0E0EN70	Uncharacterized protein. (871 aa)
	A0A0E0ECC2	Isocitrate lyase. (589 aa)
	A0A0E0EQP2	Protein kinase domain-containing protein. (1618 aa)
	A0A0E0BVY6	Uncharacterized protein. (1001 aa)
	A0A0E0BZ97	3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate. (699 aa)
	A0A0E0C0P2	Pyruvate kinase; Belongs to the pyruvate kinase family. (518 aa)
	A0A0E0C1E4	Uncharacterized protein. (968 aa)
	A0A0E0C5K9	Pyruvate kinase; Belongs to the pyruvate kinase family. (582 aa)
	A0A0E0C7Y2	Uncharacterized protein. (966 aa)
	A0A0E0D2H1	Pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family. (895 aa)
	A0A0E0D4D7	Pyruvate kinase; Belongs to the pyruvate kinase family. (556 aa)

Your Current Organism:

Oryza meridionalis

NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0BVY6	A0A0E0C0P2	Uncharacterized protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.885
A0A0E0BVY6	A0A0E0C1E4	Uncharacterized protein.	Uncharacterized protein.	0.722
A0A0E0BVY6	A0A0E0C5K9	Uncharacterized protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.899
A0A0E0BVY6	A0A0E0C7Y2	Uncharacterized protein.	Uncharacterized protein.	0.723
A0A0E0BVY6	A0A0E0D2H1	Uncharacterized protein.	Pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family.	0.951
A0A0E0BVY6	A0A0E0D4D7	Uncharacterized protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.882
A0A0E0BVY6	A0A0E0DDE0	Uncharacterized protein.	Uncharacterized protein.	0.484
A0A0E0BVY6	A0A0E0DFV1	Uncharacterized protein.	Uncharacterized protein.	0.484
A0A0E0BVY6	A0A0E0DK60	Uncharacterized protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.889
A0A0E0BVY6	A0A0E0DR93	Uncharacterized protein.	Pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family.	0.951
A0A0E0BVY6	A0A0E0E9X3	Uncharacterized protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.902
A0A0E0BVY6	A0A0E0ECC2	Uncharacterized protein.	Isocitrate lyase.	0.484
A0A0E0BVY6	A0A0E0EKV3	Uncharacterized protein.	Uncharacterized protein.	0.721
A0A0E0BVY6	A0A0E0EN70	Uncharacterized protein.	Uncharacterized protein.	0.882
A0A0E0BVY6	A0A0E0EQP2	Uncharacterized protein.	Protein kinase domain-containing protein.	0.723
A0A0E0BVY6	A0A0E0F3P2	Uncharacterized protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.880
A0A0E0BVY6	A0A0E0F9J2	Uncharacterized protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.880
A0A0E0BVY6	A0A0E0FAD3	Uncharacterized protein.	Uncharacterized protein.	0.484
A0A0E0C0P2	A0A0E0BVY6	Pyruvate kinase; Belongs to the pyruvate kinase family.	Uncharacterized protein.	0.885
A0A0E0C0P2	A0A0E0C1E4	Pyruvate kinase; Belongs to the pyruvate kinase family.	Uncharacterized protein.	0.881