66 items (Oryza meridionalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0BWZ5	Uncharacterized protein. (245 aa)
	A0A0E0BX12	Uncharacterized protein. (281 aa)
	A0A0E0BY53	DNA_pol3_gamma3 domain-containing protein. (1176 aa)
	A0A0E0C164	Ubiquitin-like domain-containing protein. (155 aa)
	A0A0E0C384	Uncharacterized protein. (569 aa)
	A0A0E0C5C0	Uncharacterized protein. (198 aa)
	A0A0E0C6D9	Uncharacterized protein. (1539 aa)
	A0A0E0C6T3	CBFD_NFYB_HMF domain-containing protein. (166 aa)
	A0A0E0C736	Uncharacterized protein. (359 aa)
	A0A0E0C7F7	DNA_pol3_gamma3 domain-containing protein. (1020 aa)
	A0A0E0CGQ9	Uncharacterized protein. (278 aa)
	A0A0E0CGV9	Uncharacterized protein; Belongs to the AAA ATPase family. (574 aa)
	A0A0E0CIS5	ANK_REP_REGION domain-containing protein. (469 aa)
	A0A0E0CL11	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2153 aa)
	A0A0E0CNL6	NAC domain-containing protein. (294 aa)
	A0A0E0CQB9	Uncharacterized protein. (957 aa)
	A0A0E0CR93	AAA domain-containing protein. (884 aa)
	A0A0E0CS54	AAA domain-containing protein. (361 aa)
	A0A0E0CS67	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (708 aa)
	A0A0E0CSS1	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (263 aa)
	A0A0E0CSW8	NAC domain-containing protein. (337 aa)
	A0A0E0CTU5	NAC domain-containing protein. (297 aa)
	A0A0E0CV49	Uncharacterized protein. (983 aa)
	A0A0E0CV74	Uncharacterized protein. (370 aa)
	A0A0E0CVA5	Uncharacterized protein. (808 aa)
	A0A0E0CX66	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (630 aa)
	A0A0E0CYD0	Uncharacterized protein. (1065 aa)
	A0A0E0D0K1	Uncharacterized protein. (260 aa)
	A0A0E0D2G3	Uncharacterized protein. (733 aa)
	A0A0E0D3P6	UmuC domain-containing protein. (250 aa)
	A0A0E0D4Z9	WD_REPEATS_REGION domain-containing protein. (521 aa)
	A0A0E0D7W7	CULLIN_2 domain-containing protein; Belongs to the cullin family. (848 aa)
	A0A0E0D831	AAA domain-containing protein. (354 aa)
	A0A0E0DHC9	AAA domain-containing protein. (335 aa)
	A0A0E0DHH2	Uncharacterized protein. (320 aa)
	A0A0E0DL14	Uncharacterized protein. (227 aa)
	A0A0E0DMG4	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (499 aa)
	A0A0E0DT49	Uncharacterized protein. (184 aa)
	A0A0E0DT50	Uncharacterized protein. (495 aa)
	A0A0E0DU49	DNA_pol3_gamma3 domain-containing protein. (843 aa)
	A0A0E0DUH7	Uncharacterized protein. (2401 aa)
	A0A0E0DV19	Uncharacterized protein. (132 aa)
	A0A0E0DV67	CPSF_A domain-containing protein. (1425 aa)
	A0A0E0DVC5	NAC domain-containing protein. (748 aa)
	A0A0E0E0K7	Uncharacterized protein. (211 aa)
	A0A0E0E5M2	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1176 aa)
	A0A0E0E917	Uncharacterized protein. (398 aa)
	A0A0E0E9F9	Uncharacterized protein. (841 aa)
	A0A0E0EFL1	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (659 aa)
	A0A0E0EFX4	Uncharacterized protein. (1730 aa)
	A0A0E0EH96	AAA domain-containing protein. (695 aa)
	A0A0E0EI46	NAC domain-containing protein. (729 aa)
	A0A0E0EIC3	Uncharacterized protein. (122 aa)
	A0A0E0EMA4	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (505 aa)
	A0A0E0ENK9	Uncharacterized protein. (136 aa)
	A0A0E0ES15	SprT-like domain-containing protein. (670 aa)
	A0A0E0EYB5	Uncharacterized protein. (1330 aa)
	A0A0E0EYL4	Uncharacterized protein. (266 aa)
	A0A0E0EYX0	NAC domain-containing protein. (324 aa)
	A0A0E0F454	DNA_pol3_gamma3 domain-containing protein. (1234 aa)
	A0A0E0F6Q1	Uncharacterized protein. (689 aa)
	A0A0E0F6T9	Replication factor C subunit 1. (1069 aa)
	A0A0E0F9U2	WD_REPEATS_REGION domain-containing protein. (712 aa)
	A0A0E0FA29	AAA domain-containing protein. (339 aa)
	A0A0E0FAV0	Uncharacterized protein. (99 aa)
	A0A0E0FCW3	Uncharacterized protein. (292 aa)

Your Current Organism:

Oryza meridionalis

NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0BWZ5	A0A0E0BY53	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.530
A0A0E0BWZ5	A0A0E0C164	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.579
A0A0E0BWZ5	A0A0E0C6T3	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.586
A0A0E0BWZ5	A0A0E0C7F7	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.530
A0A0E0BWZ5	A0A0E0CL11	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.704
A0A0E0BWZ5	A0A0E0CQB9	Uncharacterized protein.	Uncharacterized protein.	0.653
A0A0E0BWZ5	A0A0E0CS54	Uncharacterized protein.	AAA domain-containing protein.	0.692
A0A0E0BWZ5	A0A0E0CSS1	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.828
A0A0E0BWZ5	A0A0E0CV49	Uncharacterized protein.	Uncharacterized protein.	0.461
A0A0E0BWZ5	A0A0E0CYD0	Uncharacterized protein.	Uncharacterized protein.	0.686
A0A0E0BWZ5	A0A0E0D2G3	Uncharacterized protein.	Uncharacterized protein.	0.528
A0A0E0BWZ5	A0A0E0D3P6	Uncharacterized protein.	UmuC domain-containing protein.	0.528
A0A0E0BWZ5	A0A0E0D4Z9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.557
A0A0E0BWZ5	A0A0E0D831	Uncharacterized protein.	AAA domain-containing protein.	0.653
A0A0E0BWZ5	A0A0E0DHC9	Uncharacterized protein.	AAA domain-containing protein.	0.704
A0A0E0BWZ5	A0A0E0DMG4	Uncharacterized protein.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.530
A0A0E0BWZ5	A0A0E0DU49	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.530
A0A0E0BWZ5	A0A0E0DV67	Uncharacterized protein.	CPSF_A domain-containing protein.	0.570
A0A0E0BWZ5	A0A0E0E5M2	Uncharacterized protein.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.596
A0A0E0BWZ5	A0A0E0E917	Uncharacterized protein.	Uncharacterized protein.	0.615