(16 nodes) Small-subunit processome network (Ceraceosorus bombacis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0N7L9E5	WD40 repeat protein. (1079 aa)
	A0A0P1B8S3	Ribosomal rna assembly protein mis3. (708 aa)
	A0A0P1B9C5	U3 small nucleolar RNA-associated protein 22. (1115 aa)
	A0A0P1BA35	Duf663-domain-containing protein. (965 aa)
	A0A0P1BAI7	UTP4, CIRH1A. (130 aa)
	A0A0P1BBD8	Nucleolar protein involved in 40S ribosome biogenesis. (990 aa)
	A0A0P1BD53	rRNA processing protein Rrp5. (1672 aa)
	A0A0P1BDX8	HAT (Half-A-TPR) repeat-containing protein. (917 aa)
	A0A0P1BHL2	Conserved WD40 repeat-containing protein. (601 aa)
	A0A0P1BID2	WD40-repeat-containing subunit of the 18S rRNA processing complex. (1057 aa)
	A0A0P1BJE4	Uncharacterized conserved protein. (1658 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1146 aa)
	A0A0P1BM15	DRIM (Down-regulated in metastasis)-like proteins. (2860 aa)
	A0A0P1BM90	WD repeat protein. (1263 aa)
	A0A0P1BQG0	WD40-repeat-containing subunit of the 18S rRNA processing complex. (926 aa)
	A0A0P1BRU2	WD40-repeat-containing subunit of the 18S rRNA processing complex. (674 aa)

Your Current Organism:

Ceraceosorus bombacis

NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0N7L9E5	A0A0P1B8S3	A0A0N7L9E5	A0A0P1B8S3	WD40 repeat protein.	Ribosomal rna assembly protein mis3.	0.998
A0A0N7L9E5	A0A0P1B9C5	A0A0N7L9E5	A0A0P1B9C5	WD40 repeat protein.	U3 small nucleolar RNA-associated protein 22.	0.999
A0A0N7L9E5	A0A0P1BA35	A0A0N7L9E5	A0A0P1BA35	WD40 repeat protein.	Duf663-domain-containing protein.	0.999
A0A0N7L9E5	A0A0P1BAI7	A0A0N7L9E5	A0A0P1BAI7	WD40 repeat protein.	UTP4, CIRH1A.	0.999
A0A0N7L9E5	A0A0P1BBD8	A0A0N7L9E5	A0A0P1BBD8	WD40 repeat protein.	Nucleolar protein involved in 40S ribosome biogenesis.	0.999
A0A0N7L9E5	A0A0P1BD53	A0A0N7L9E5	A0A0P1BD53	WD40 repeat protein.	rRNA processing protein Rrp5.	0.999
A0A0N7L9E5	A0A0P1BDX8	A0A0N7L9E5	A0A0P1BDX8	WD40 repeat protein.	HAT (Half-A-TPR) repeat-containing protein.	0.999
A0A0N7L9E5	A0A0P1BHL2	A0A0N7L9E5	A0A0P1BHL2	WD40 repeat protein.	Conserved WD40 repeat-containing protein.	0.999
A0A0N7L9E5	A0A0P1BID2	A0A0N7L9E5	A0A0P1BID2	WD40 repeat protein.	WD40-repeat-containing subunit of the 18S rRNA processing complex.	0.997
A0A0N7L9E5	A0A0P1BJE4	A0A0N7L9E5	A0A0P1BJE4	WD40 repeat protein.	Uncharacterized conserved protein.	0.999
A0A0N7L9E5	A0A0P1BM15	A0A0N7L9E5	A0A0P1BM15	WD40 repeat protein.	DRIM (Down-regulated in metastasis)-like proteins.	0.999
A0A0N7L9E5	A0A0P1BM90	A0A0N7L9E5	A0A0P1BM90	WD40 repeat protein.	WD repeat protein.	0.998
A0A0N7L9E5	A0A0P1BQG0	A0A0N7L9E5	A0A0P1BQG0	WD40 repeat protein.	WD40-repeat-containing subunit of the 18S rRNA processing complex.	0.999
A0A0N7L9E5	A0A0P1BRU2	A0A0N7L9E5	A0A0P1BRU2	WD40 repeat protein.	WD40-repeat-containing subunit of the 18S rRNA processing complex.	0.999
A0A0N7L9E5	NAT10	A0A0N7L9E5	A0A0P1BKJ1	WD40 repeat protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.986
A0A0P1B8S3	A0A0N7L9E5	A0A0P1B8S3	A0A0N7L9E5	Ribosomal rna assembly protein mis3.	WD40 repeat protein.	0.998
A0A0P1B8S3	A0A0P1B9C5	A0A0P1B8S3	A0A0P1B9C5	Ribosomal rna assembly protein mis3.	U3 small nucleolar RNA-associated protein 22.	0.997
A0A0P1B8S3	A0A0P1BA35	A0A0P1B8S3	A0A0P1BA35	Ribosomal rna assembly protein mis3.	Duf663-domain-containing protein.	0.999
A0A0P1B8S3	A0A0P1BAI7	A0A0P1B8S3	A0A0P1BAI7	Ribosomal rna assembly protein mis3.	UTP4, CIRH1A.	0.998
A0A0P1B8S3	A0A0P1BBD8	A0A0P1B8S3	A0A0P1BBD8	Ribosomal rna assembly protein mis3.	Nucleolar protein involved in 40S ribosome biogenesis.	0.999