(14 nodes) Preribosome, small subunit precursor network (Ceraceosorus bombacis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0P1BBM9	Uncharacterized conserved protein. (248 aa)
	A0A0P1BRU2	WD40-repeat-containing subunit of the 18S rRNA processing complex. (674 aa)
	A0A0P1BQA8	40s ribosomal protein s3; Belongs to the universal ribosomal protein uS3 family. (179 aa)
	A0A0P1BM15	DRIM (Down-regulated in metastasis)-like proteins. (2860 aa)
	A0A0P1BKQ7	Related to rio2 protein. (620 aa)
	A0A0P1BEZ3	Nucleolar protein NOP52/RRP1. (387 aa)
	A0A0P1BCZ7	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (322 aa)
	A0A0P1BCI2	Uncharacterized conserved protein. (733 aa)
	A0A0P1BBD8	Nucleolar protein involved in 40S ribosome biogenesis. (990 aa)
	A0A0P1BAC2	Cell adhesion complex protein bystin. (534 aa)
	A0A0P1B9P1	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (547 aa)
	A0A0P1B8S3	Ribosomal rna assembly protein mis3. (708 aa)
	A0A0P1B7Y5	Uncharacterized conserved protein. (1546 aa)
	A0A0N7LAK2	Predicted nucleolar protein involved in ribosome biogenesis. (788 aa)

Your Current Organism:

Ceraceosorus bombacis

NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0N7LAK2	A0A0P1B7Y5	Predicted nucleolar protein involved in ribosome biogenesis.	Uncharacterized conserved protein.	0.747
A0A0N7LAK2	A0A0P1B8S3	Predicted nucleolar protein involved in ribosome biogenesis.	Ribosomal rna assembly protein mis3.	0.998
A0A0N7LAK2	A0A0P1B9P1	Predicted nucleolar protein involved in ribosome biogenesis.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.899
A0A0N7LAK2	A0A0P1BAC2	Predicted nucleolar protein involved in ribosome biogenesis.	Cell adhesion complex protein bystin.	0.999
A0A0N7LAK2	A0A0P1BBD8	Predicted nucleolar protein involved in ribosome biogenesis.	Nucleolar protein involved in 40S ribosome biogenesis.	0.999
A0A0N7LAK2	A0A0P1BCI2	Predicted nucleolar protein involved in ribosome biogenesis.	Uncharacterized conserved protein.	0.821
A0A0N7LAK2	A0A0P1BCZ7	Predicted nucleolar protein involved in ribosome biogenesis.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.970
A0A0N7LAK2	A0A0P1BEZ3	Predicted nucleolar protein involved in ribosome biogenesis.	Nucleolar protein NOP52/RRP1.	0.887
A0A0N7LAK2	A0A0P1BKQ7	Predicted nucleolar protein involved in ribosome biogenesis.	Related to rio2 protein.	0.655
A0A0N7LAK2	A0A0P1BM15	Predicted nucleolar protein involved in ribosome biogenesis.	DRIM (Down-regulated in metastasis)-like proteins.	0.998
A0A0N7LAK2	A0A0P1BRU2	Predicted nucleolar protein involved in ribosome biogenesis.	WD40-repeat-containing subunit of the 18S rRNA processing complex.	0.998
A0A0P1B7Y5	A0A0N7LAK2	Uncharacterized conserved protein.	Predicted nucleolar protein involved in ribosome biogenesis.	0.747
A0A0P1B7Y5	A0A0P1B8S3	Uncharacterized conserved protein.	Ribosomal rna assembly protein mis3.	0.689
A0A0P1B7Y5	A0A0P1B9P1	Uncharacterized conserved protein.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.998
A0A0P1B7Y5	A0A0P1BAC2	Uncharacterized conserved protein.	Cell adhesion complex protein bystin.	0.999
A0A0P1B7Y5	A0A0P1BBD8	Uncharacterized conserved protein.	Nucleolar protein involved in 40S ribosome biogenesis.	0.930
A0A0P1B7Y5	A0A0P1BCI2	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.999
A0A0P1B7Y5	A0A0P1BCZ7	Uncharacterized conserved protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.994
A0A0P1B7Y5	A0A0P1BEZ3	Uncharacterized conserved protein.	Nucleolar protein NOP52/RRP1.	0.753
A0A0P1B7Y5	A0A0P1BKQ7	Uncharacterized conserved protein.	Related to rio2 protein.	0.999