(69 nodes) Preribosome network (Ceraceosorus bombacis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0P1BMS8	Alpha-l rna-binding motif-containing protein. (182 aa)
	A0A0N7L8U3	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (652 aa)
	A0A0N7L970	Probable rok1-atp-dependent rna helicase; Belongs to the DEAD box helicase family. (582 aa)
	A0A0N7L9D0	Uncharacterized conserved protein. (406 aa)
	A0A0N7L9E5	WD40 repeat protein. (1079 aa)
	A0A0N7L9F9	Ribosome-assembly protein 3. (194 aa)
	A0A0N7L9I3	Brix-domain-containing protein. (300 aa)
	A0A0N7L9I9	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (627 aa)
	A0A0N7LAK2	Predicted nucleolar protein involved in ribosome biogenesis. (788 aa)
	A0A0N7LBE0	Uncharacterized protein. (388 aa)
	A0A0P1B7Y5	Uncharacterized conserved protein. (1546 aa)
	A0A0P1B8B6	Predicted RNA-binding protein, contains Pumilio domains. (819 aa)
	A0A0P1B8S3	Ribosomal rna assembly protein mis3. (708 aa)
	A0A0P1B9C5	U3 small nucleolar RNA-associated protein 22. (1115 aa)
	A0A0P1B9U7	Uncharacterized protein family UPF0642. (133 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (929 aa)
	A0A0P1BAC2	Cell adhesion complex protein bystin. (534 aa)
	A0A0P1BB61	Apoptosis antagonizing transcription factor/protein transport protein. (534 aa)
	A0A0P1BBD8	Nucleolar protein involved in 40S ribosome biogenesis. (990 aa)
	A0A0P1BBM9	Uncharacterized conserved protein. (248 aa)
	A0A0P1BBU2	Bud site selection-related protein. (190 aa)
	A0A0P1BBZ8	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (792 aa)
	A0A0P1BC09	40s ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family. (259 aa)
	A0A0P1BCI2	Uncharacterized conserved protein. (733 aa)
	A0A0P1BCQ2	DEAD-box ATP-dependent RNA helicase. (947 aa)
	A0A0P1BCT5	Tgf beta-inducible nuclear protein 1. (254 aa)
	A0A0P1BD53	rRNA processing protein Rrp5. (1672 aa)
	A0A0P1BDX8	HAT (Half-A-TPR) repeat-containing protein. (917 aa)
	A0A0P1BE08	Uncharacterized protein. (349 aa)
	A0A0P1BE96	Atp-dependent rna helicase dbp3; Belongs to the DEAD box helicase family. (661 aa)
	A0A0P1BEQ3	Ribosome biogenesis protein brx1. (311 aa)
	A0A0P1BEZ3	Nucleolar protein NOP52/RRP1. (387 aa)
	A0A0P1BF52	rRNA processing protein RRP7. (409 aa)
	A0A0P1BFE2	Protein involved in the nuclear export of pre-ribosomes. (1021 aa)
	A0A0P1BFY5	Disrupter of silencing SAS10. (769 aa)
	A0A0P1BG97	RNA helicase. (820 aa)
	A0A0P1BGB6	Related to nop15-protein involved in 60s ribosomal subunit biogenesis. (384 aa)
	A0A0P1BGU7	Fcf1-domain-containing protein. (205 aa)
	A0A0P1BHD7	Dead-domain-containing protein. (904 aa)
	A0A0P1BHQ7	Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis. (275 aa)
	A0A0P1BI09	Related to nop6-protein with possible role in rrna processing. (377 aa)
	A0A0P1BI77	60s ribosomal protein L30 isolog. (166 aa)
	A0A0P1BIC5	Sof1-like rRNA processing protein (Contains WD40 repeats). (508 aa)
	A0A0P1BID2	WD40-repeat-containing subunit of the 18S rRNA processing complex. (1057 aa)
	A0A0P1BJ39	Protein MAK16; Belongs to the MAK16 family. (369 aa)
	A0A0P1BJE5	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	A0A0P1BJJ4	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (452 aa)
	A0A0P1BJU1	Small nucleolar ribonucleoprotein complex subunit utp14. (323 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1146 aa)
	A0A0P1BKQ7	Related to rio2 protein. (620 aa)
	A0A0P1BKS2	U3 snoRNP-associated protein (Contains WD40 repeats). (707 aa)
	A0A0P1BKY9	Uncharacterized conserved protein. (213 aa)
	A0A0P1BL98	RNA 3'-terminal phosphate cyclase. (413 aa)
	A0A0P1BLE4	Uncharacterized protein. (388 aa)
	A0A0P1BLN4	Uncharacterized proteins of PilT N-term./Vapc superfamily. (283 aa)
	A0A0P1BM15	DRIM (Down-regulated in metastasis)-like proteins. (2860 aa)
	A0A0P1BM90	WD repeat protein. (1263 aa)
	A0A0P1BMH8	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (319 aa)
	A0A0P1BMS3	AAA-type ATPase. (926 aa)
	A0A0P1BMW0	Predicted DEAD-box-containing helicase. (354 aa)
	A0A0P1BMY2	Uncharacterized protein. (198 aa)
	A0A0P1BNP5	Uncharacterized conserved protein. (363 aa)
	A0A0P1BPA2	P-loop containing nucleoside triphosphate hydrolase protein. (1483 aa)
	A0A0P1BPG0	Uncharacterized protein. (738 aa)
	A0A0P1BPY7	ATP-dependent RNA helicase DBP10. (1044 aa)
	A0A0P1BQ87	WD40 repeat protein. (648 aa)
	A0A0P1BQG0	WD40-repeat-containing subunit of the 18S rRNA processing complex. (926 aa)
	A0A0P1BQU3	Atp-dependent rna helicase has1; Belongs to the DEAD box helicase family. (521 aa)
	A0A0P1BRU2	WD40-repeat-containing subunit of the 18S rRNA processing complex. (674 aa)

Your Current Organism:

Ceraceosorus bombacis

NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0N7L8U3	A0A0N7L970	A0A0N7L8U3	A0A0N7L970	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Probable rok1-atp-dependent rna helicase; Belongs to the DEAD box helicase family.	0.882
A0A0N7L8U3	A0A0N7L9D0	A0A0N7L8U3	A0A0N7L9D0	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Uncharacterized conserved protein.	0.989
A0A0N7L8U3	A0A0N7L9E5	A0A0N7L8U3	A0A0N7L9E5	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	WD40 repeat protein.	0.861
A0A0N7L8U3	A0A0N7L9I3	A0A0N7L8U3	A0A0N7L9I3	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Brix-domain-containing protein.	0.961
A0A0N7L8U3	A0A0N7L9I9	A0A0N7L8U3	A0A0N7L9I9	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	0.497
A0A0N7L8U3	A0A0N7LAK2	A0A0N7L8U3	A0A0N7LAK2	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Predicted nucleolar protein involved in ribosome biogenesis.	0.891
A0A0N7L8U3	A0A0P1B7Y5	A0A0N7L8U3	A0A0P1B7Y5	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Uncharacterized conserved protein.	0.871
A0A0N7L8U3	A0A0P1B8B6	A0A0N7L8U3	A0A0P1B8B6	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Predicted RNA-binding protein, contains Pumilio domains.	0.577
A0A0N7L8U3	A0A0P1B8S3	A0A0N7L8U3	A0A0P1B8S3	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Ribosomal rna assembly protein mis3.	0.874
A0A0N7L8U3	A0A0P1B9C5	A0A0N7L8U3	A0A0P1B9C5	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	U3 small nucleolar RNA-associated protein 22.	0.994
A0A0N7L8U3	A0A0P1BAC2	A0A0N7L8U3	A0A0P1BAC2	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Cell adhesion complex protein bystin.	0.813
A0A0N7L8U3	A0A0P1BB61	A0A0N7L8U3	A0A0P1BB61	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Apoptosis antagonizing transcription factor/protein transport protein.	0.795
A0A0N7L8U3	A0A0P1BBD8	A0A0N7L8U3	A0A0P1BBD8	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Nucleolar protein involved in 40S ribosome biogenesis.	0.973
A0A0N7L8U3	A0A0P1BBM9	A0A0N7L8U3	A0A0P1BBM9	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Uncharacterized conserved protein.	0.445
A0A0N7L8U3	A0A0P1BBZ8	A0A0N7L8U3	A0A0P1BBZ8	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.668
A0A0N7L8U3	A0A0P1BCI2	A0A0N7L8U3	A0A0P1BCI2	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Uncharacterized conserved protein.	0.583
A0A0N7L8U3	A0A0P1BCQ2	A0A0N7L8U3	A0A0P1BCQ2	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	DEAD-box ATP-dependent RNA helicase.	0.850
A0A0N7L8U3	A0A0P1BD53	A0A0N7L8U3	A0A0P1BD53	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	rRNA processing protein Rrp5.	0.930
A0A0N7L8U3	A0A0P1BDX8	A0A0N7L8U3	A0A0P1BDX8	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	HAT (Half-A-TPR) repeat-containing protein.	0.824
A0A0N7L8U3	A0A0P1BE96	A0A0N7L8U3	A0A0P1BE96	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Atp-dependent rna helicase dbp3; Belongs to the DEAD box helicase family.	0.770