(9 nodes) Tetrapyrrole methylase, subdomain 1 network (Lechevalieria xinjiangensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SES31264.1	uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase. (405 aa)
	SEP83555.1	Uroporphyrinogen III methyltransferase / synthase. (515 aa)
	rsmI	16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (281 aa)
	SER24784.1	precorrin-6A synthase (deacetylating). (247 aa)
	SER45484.1	precorrin-6Y C5,15-methyltransferase (decarboxylating). (381 aa)
	SER45517.1	Precorrin-4/cobalt-precorrin-4 C11-methyltransferase; Belongs to the precorrin methyltransferase family. (246 aa)
	SER45566.1	Precorrin-2 C20-methyltransferase / precorrin-3B C17-methyltransferase; Belongs to the precorrin methyltransferase family. (483 aa)
	SES31300.1	Cobalt-precorrin 5A hydrolase / precorrin-3B C17-methyltransferase. (418 aa)
	SES31320.1	Precorrin-4/cobalt-precorrin-4 C11-methyltransferase. (351 aa)

Your Current Organism:

Lechevalieria xinjiangensis

NCBI taxonomy Id: 402600
Other names: CGMCC 4.3525, DSM 45081, JCM 15473, L. xinjiangensis, Lechevalieria xinjiangensis Wang et al. 2007, strain R24

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEP83555.1	SER24784.1	SAMN05216188_101635	SAMN05216188_109136	Uroporphyrinogen III methyltransferase / synthase.	precorrin-6A synthase (deacetylating).	0.851
SEP83555.1	SER45484.1	SAMN05216188_101635	SAMN05216188_111232	Uroporphyrinogen III methyltransferase / synthase.	precorrin-6Y C5,15-methyltransferase (decarboxylating).	0.953
SEP83555.1	SER45517.1	SAMN05216188_101635	SAMN05216188_111233	Uroporphyrinogen III methyltransferase / synthase.	Precorrin-4/cobalt-precorrin-4 C11-methyltransferase; Belongs to the precorrin methyltransferase family.	0.865
SEP83555.1	SER45566.1	SAMN05216188_101635	SAMN05216188_111235	Uroporphyrinogen III methyltransferase / synthase.	Precorrin-2 C20-methyltransferase / precorrin-3B C17-methyltransferase; Belongs to the precorrin methyltransferase family.	0.981
SEP83555.1	SES31264.1	SAMN05216188_101635	SAMN05216188_13225	Uroporphyrinogen III methyltransferase / synthase.	uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.	0.997
SEP83555.1	SES31300.1	SAMN05216188_101635	SAMN05216188_13228	Uroporphyrinogen III methyltransferase / synthase.	Cobalt-precorrin 5A hydrolase / precorrin-3B C17-methyltransferase.	0.989
SEP83555.1	SES31320.1	SAMN05216188_101635	SAMN05216188_13230	Uroporphyrinogen III methyltransferase / synthase.	Precorrin-4/cobalt-precorrin-4 C11-methyltransferase.	0.945
SEP83555.1	rsmI	SAMN05216188_101635	SAMN05216188_102375	Uroporphyrinogen III methyltransferase / synthase.	16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.	0.799
SER24784.1	SEP83555.1	SAMN05216188_109136	SAMN05216188_101635	precorrin-6A synthase (deacetylating).	Uroporphyrinogen III methyltransferase / synthase.	0.851
SER24784.1	SER45484.1	SAMN05216188_109136	SAMN05216188_111232	precorrin-6A synthase (deacetylating).	precorrin-6Y C5,15-methyltransferase (decarboxylating).	0.988
SER24784.1	SER45517.1	SAMN05216188_109136	SAMN05216188_111233	precorrin-6A synthase (deacetylating).	Precorrin-4/cobalt-precorrin-4 C11-methyltransferase; Belongs to the precorrin methyltransferase family.	0.987
SER24784.1	SER45566.1	SAMN05216188_109136	SAMN05216188_111235	precorrin-6A synthase (deacetylating).	Precorrin-2 C20-methyltransferase / precorrin-3B C17-methyltransferase; Belongs to the precorrin methyltransferase family.	0.953
SER24784.1	SES31264.1	SAMN05216188_109136	SAMN05216188_13225	precorrin-6A synthase (deacetylating).	uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.	0.899
SER24784.1	SES31300.1	SAMN05216188_109136	SAMN05216188_13228	precorrin-6A synthase (deacetylating).	Cobalt-precorrin 5A hydrolase / precorrin-3B C17-methyltransferase.	0.996
SER24784.1	SES31320.1	SAMN05216188_109136	SAMN05216188_13230	precorrin-6A synthase (deacetylating).	Precorrin-4/cobalt-precorrin-4 C11-methyltransferase.	0.976
SER45484.1	SEP83555.1	SAMN05216188_111232	SAMN05216188_101635	precorrin-6Y C5,15-methyltransferase (decarboxylating).	Uroporphyrinogen III methyltransferase / synthase.	0.953
SER45484.1	SER24784.1	SAMN05216188_111232	SAMN05216188_109136	precorrin-6Y C5,15-methyltransferase (decarboxylating).	precorrin-6A synthase (deacetylating).	0.988
SER45484.1	SER45517.1	SAMN05216188_111232	SAMN05216188_111233	precorrin-6Y C5,15-methyltransferase (decarboxylating).	Precorrin-4/cobalt-precorrin-4 C11-methyltransferase; Belongs to the precorrin methyltransferase family.	0.999
SER45484.1	SER45566.1	SAMN05216188_111232	SAMN05216188_111235	precorrin-6Y C5,15-methyltransferase (decarboxylating).	Precorrin-2 C20-methyltransferase / precorrin-3B C17-methyltransferase; Belongs to the precorrin methyltransferase family.	0.999
SER45484.1	SES31264.1	SAMN05216188_111232	SAMN05216188_13225	precorrin-6Y C5,15-methyltransferase (decarboxylating).	uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.	0.986