STRINGSTRING
Rpic_0808 Rpic_0808 Rpic_1240 Rpic_1240 Rpic_1241 Rpic_1241 Rpic_1242 Rpic_1242 nnrD nnrD Rpic_2422 Rpic_2422 Rpic_2423 Rpic_2423 tsaD tsaD Rpic_2808 Rpic_2808 Rpic_2814 Rpic_2814 Rpic_2815 Rpic_2815 Rpic_2816 Rpic_2816 queG queG Rpic_3058 Rpic_3058 Rpic_3060 Rpic_3060 rppH rppH Rpic_4702 Rpic_4702
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rpic_0808PFAM: NUDIX hydrolase; KEGG: rso:RSc0937 hypothetical protein. (234 aa)
Rpic_1240PFAM: peptidase M22 glycoprotease; KEGG: rso:RSc1367 putative transmembrane protein. (246 aa)
Rpic_1241TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSc1368 probable acyltransferase protein. (175 aa)
Rpic_1242TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rso:RSc1369 putative DNA polymerase-related protein, bacteriophage-type. (264 aa)
nnrDCarbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...] (531 aa)
Rpic_2422KEGG: rso:RSc2217 hypothetical protein. (152 aa)
Rpic_2423PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rso:RSc2218 putative transmembrane protein. (407 aa)
tsaDMetalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (347 aa)
Rpic_2808PFAM: protein of unknown function DUF343; KEGG: rso:RSc2531 hypothetical protein; Belongs to the UPF0434 family. (62 aa)
Rpic_2814PFAM: GCN5-related N-acetyltransferase; KEGG: bxe:Bxe_A0957 putative acetyltransferase. (181 aa)
Rpic_2815N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: rso:RSc2539 probable N-acetylmuramoyl-L-alanine amidase AmiC precursor protein. (506 aa)
Rpic_2816PFAM: protein of unknown function UPF0079; KEGG: rso:RSc2540 hypothetical protein. (192 aa)
queGIron-sulfur cluster binding protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. (385 aa)
Rpic_3058PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: rso:RSc2813 probable transmembrane protein. (197 aa)
Rpic_3060PFAM: Lytic transglycosylase catalytic; KEGG: rso:RSc2815 hypothetical signal peptide protein. (253 aa)
rppHNUDIX hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. (235 aa)
Rpic_4702PFAM: histidine triad (HIT) protein; KEGG: rso:RSp0494 putative HIT-like protein. (144 aa)
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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