STRINGSTRING
Rpic_0138 Rpic_0138 Rpic_0151 Rpic_0151 Rpic_0153 Rpic_0153 Rpic_0192 Rpic_0192 Rpic_0522 Rpic_0522 Rpic_0658 Rpic_0658 Rpic_0781 Rpic_0781 lapB lapB Rpic_0800 Rpic_0800 Rpic_0924 Rpic_0924 Rpic_0949 Rpic_0949 Rpic_1023 Rpic_1023 Rpic_1024 Rpic_1024 Rpic_1071 Rpic_1071 Rpic_1190 Rpic_1190 Rpic_1237 Rpic_1237 Rpic_1374 Rpic_1374 Rpic_1756 Rpic_1756 Rpic_1923 Rpic_1923 Rpic_1942 Rpic_1942 Rpic_2059 Rpic_2059 Rpic_2125 Rpic_2125 Rpic_2147 Rpic_2147 Rpic_2156 Rpic_2156 Rpic_2160 Rpic_2160 Rpic_2222 Rpic_2222 Rpic_2262 Rpic_2262 Rpic_2264 Rpic_2264 Rpic_2270 Rpic_2270 Rpic_2439 Rpic_2439 Rpic_2502 Rpic_2502 Rpic_2569 Rpic_2569 Rpic_2595 Rpic_2595 Rpic_2596 Rpic_2596 Rpic_2597 Rpic_2597 Rpic_2598 Rpic_2598 Rpic_2999 Rpic_2999 Rpic_3011 Rpic_3011 Rpic_3012 Rpic_3012 Rpic_3038 Rpic_3038 Rpic_3063 Rpic_3063 Rpic_3081 Rpic_3081 Rpic_3100 Rpic_3100 Rpic_3210 Rpic_3210 Rpic_3347 Rpic_3347 Rpic_3372 Rpic_3372 Rpic_3378 Rpic_3378 Rpic_3381 Rpic_3381 Rpic_3410 Rpic_3410 Rpic_3494 Rpic_3494 Rpic_3682 Rpic_3682 Rpic_3857 Rpic_3857 Rpic_4238 Rpic_4238 Rpic_4241 Rpic_4241 Rpic_4242 Rpic_4242 Rpic_4243 Rpic_4243 Rpic_4306 Rpic_4306 Rpic_4499 Rpic_4499 Rpic_4572 Rpic_4572 Rpic_4796 Rpic_4796 Rpic_4798 Rpic_4798
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rpic_0138PFAM: Domain of unknown function DUF1840; KEGG: rso:RSc0288 hypothetical protein. (107 aa)
Rpic_0151KEGG: rso:RSc0297 hypothetical protein. (85 aa)
Rpic_0153KEGG: rso:RSc0299 putative proline-rich signal peptide protein. (360 aa)
Rpic_0192KEGG: rso:RSc0335 putative transmembrane protein. (189 aa)
Rpic_0522PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RSc0595 putative outer membrane receptor signal peptide protein. (727 aa)
Rpic_0658PFAM: Lytic transglycosylase catalytic; KEGG: rso:RSc0709 probable transmembrane protein. (395 aa)
Rpic_0781KEGG: rso:RSc0911 probable transmembrane protein. (107 aa)
lapBTetratricopeptide TPR_2 repeat protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family. (424 aa)
Rpic_0800KEGG: rso:RSc0929 probable transmembrane protein. (151 aa)
Rpic_0924PFAM: glutaredoxin 2; KEGG: rso:RSc1059 hypothetical protein. (91 aa)
Rpic_0949PFAM: porin Gram-negative type; KEGG: rso:RSc1082 probable porin transmembrane protein. (411 aa)
Rpic_1023TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rso:RSc1180 probable inner membrane transmembrane protein. (448 aa)
Rpic_1024KEGG: rso:RSc1181 probable inner membrane transmembrane protein. (596 aa)
Rpic_1071PFAM: phosphoribosyltransferase; KEGG: rso:RSc1227 putative nucleotide phosphoribosyltransferase protein. (190 aa)
Rpic_1190KEGG: rso:RSc1315 putative signal peptide protein. (141 aa)
Rpic_1237PFAM: Domain of unknown function DUF1857; KEGG: rso:RSc1364 hypothetical protein. (156 aa)
Rpic_1374KEGG: rso:RSc1480 probable lipoprotein transmembrane. (172 aa)
Rpic_1756PFAM: porin Gram-negative type; KEGG: rme:Rmet_5974 porin, gram-negative type. (355 aa)
Rpic_1923KEGG: rso:RSc1624 hypothetical protein. (254 aa)
Rpic_1942TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: rso:RSc1605 hypothetical protein. (193 aa)
Rpic_2059PFAM: porin Gram-negative type; KEGG: reu:Reut_C6252 porin, gram-negative type. (351 aa)
Rpic_2125TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: rso:RSc1972 putative phasin protein. (169 aa)
Rpic_2147PFAM: protein of unknown function DUF339; KEGG: rso:RSc1992 hypothetical protein. (95 aa)
Rpic_2156KEGG: rso:RSc2001 probable signal peptide protein. (184 aa)
Rpic_2160KEGG: rso:RSc2005 hypothetical protein. (403 aa)
Rpic_2222KEGG: rso:RSc2071 probable transmembrane protein. (150 aa)
Rpic_2262PFAM: porin Gram-negative type; KEGG: rso:RS00714 probable porin precursor transmembrane protein. (356 aa)
Rpic_2264KEGG: rso:RSc2124 probable lipoprotein transmembrane. (222 aa)
Rpic_2270KEGG: rso:RSc2151 probable signal peptide protein. (145 aa)
Rpic_2439KEGG: rso:RSc2234 probable transmembrane protein. (265 aa)
Rpic_2502KEGG: mpt:Mpe_A1592 putative outer membrane protein (porin). (376 aa)
Rpic_2569PFAM: HemY domain protein; KEGG: rso:RSc2355 putative protein porphyrin biosynthesis. (397 aa)
Rpic_2595KEGG: rso:RSc2382 probable lipoprotein. (180 aa)
Rpic_2596PFAM: protein of unknown function DUF490; KEGG: rso:RSc2383 putative signal peptide protein. (1304 aa)
Rpic_2597PFAM: surface antigen (D15); KEGG: rso:RSc2384 putative lipoprotein. (595 aa)
Rpic_2598KEGG: rso:RSc2385 hypothetical protein. (62 aa)
Rpic_2999PFAM: porin Gram-negative type; KEGG: rso:RSc2760 putative porin signal peptide protein. (354 aa)
Rpic_3011KEGG: rso:RSc2765 hypothetical protein. (207 aa)
Rpic_3012PFAM: guanine-specific ribonuclease N1 and T1; KEGG: rso:RSc2766 probable guanyl-specific ribonuclease precursor signal peptide protein. (143 aa)
Rpic_3038KEGG: rso:RSc2793 probable histone H1 protein. (186 aa)
Rpic_3063PFAM: Protein of unknown function CNP1-like; KEGG: rso:RSc2818 putative lipoprotein. (209 aa)
Rpic_3081KEGG: rso:RSc2836 hypothetical protein. (173 aa)
Rpic_3100PFAM: porin Gram-negative type; KEGG: rso:RSc2855 putative outer membrane porin signal peptide protein. (392 aa)
Rpic_3210PFAM: porin Gram-negative type; KEGG: rso:RSc2933 putative porin signal peptide protein. (368 aa)
Rpic_3347PFAM: porin Gram-negative type; KEGG: reh:H16_A0083 outer membrane protein (porin). (348 aa)
Rpic_3372PFAM: porin Gram-negative type; KEGG: rso:RSc3091 probable outer membrane porin signal peptide protein. (376 aa)
Rpic_3378PFAM: Domain of unknown function DUF1835; KEGG: rso:RSc3094 hypothetical protein. (264 aa)
Rpic_3381PFAM: GCN5-related N-acetyltransferase; KEGG: rso:RSc3098 hypothetical protein. (231 aa)
Rpic_3410PFAM: porin Gram-negative type; KEGG: rso:RSc2933 putative porin signal peptide protein. (386 aa)
Rpic_3494PFAM: sodium/hydrogen exchanger; KEGG: rso:RSc3299 hypothetical protein. (407 aa)
Rpic_3682PFAM: Thioredoxin domain; KEGG: rso:RSc0067 putative thioredoxin-like protein. (126 aa)
Rpic_3857KEGG: rso:RS03006 putative lipoprotein. (356 aa)
Rpic_4238PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: rso:RS02604 putative HNS-like transcription regulator protein. (102 aa)
Rpic_4241PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: rso:RS02601 probable activation/secretion signal peptide protein. (581 aa)
Rpic_4242KEGG: rso:RS02600 putative hemagglutinin-related transmembrane protein. (491 aa)
Rpic_4243KEGG: rso:RS02599 putative hemagglutinin-related transmembrane protein. (374 aa)
Rpic_4306PFAM: porin Gram-negative type; KEGG: reu:Reut_B5031 porin, gram-negative type. (354 aa)
Rpic_4499PFAM: porin Gram-negative type; KEGG: dac:Daci_4894 porin gram-negative type. (366 aa)
Rpic_4572KEGG: reu:Reut_B4200 probable transmembrane protein. (173 aa)
Rpic_4796PFAM: porin Gram-negative type; KEGG: rso:RS00714 probable porin precursor transmembrane protein. (352 aa)
Rpic_4798PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: rso:RS00711 putative HNS-like transcription regulator protein. (96 aa)
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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