STRINGSTRING
Rpic_0138 Rpic_0138 Rpic_0192 Rpic_0192 Rpic_1374 Rpic_1374 Rpic_1756 Rpic_1756 Rpic_2156 Rpic_2156 Rpic_2160 Rpic_2160 Rpic_2264 Rpic_2264 Rpic_2439 Rpic_2439 Rpic_2595 Rpic_2595 Rpic_3081 Rpic_3081 Rpic_3378 Rpic_3378 Rpic_3410 Rpic_3410 Rpic_3857 Rpic_3857 Rpic_4241 Rpic_4241 Rpic_4242 Rpic_4242 Rpic_4243 Rpic_4243 Rpic_4572 Rpic_4572
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rpic_0138PFAM: Domain of unknown function DUF1840; KEGG: rso:RSc0288 hypothetical protein. (107 aa)
Rpic_0192KEGG: rso:RSc0335 putative transmembrane protein. (189 aa)
Rpic_1374KEGG: rso:RSc1480 probable lipoprotein transmembrane. (172 aa)
Rpic_1756PFAM: porin Gram-negative type; KEGG: rme:Rmet_5974 porin, gram-negative type. (355 aa)
Rpic_2156KEGG: rso:RSc2001 probable signal peptide protein. (184 aa)
Rpic_2160KEGG: rso:RSc2005 hypothetical protein. (403 aa)
Rpic_2264KEGG: rso:RSc2124 probable lipoprotein transmembrane. (222 aa)
Rpic_2439KEGG: rso:RSc2234 probable transmembrane protein. (265 aa)
Rpic_2595KEGG: rso:RSc2382 probable lipoprotein. (180 aa)
Rpic_3081KEGG: rso:RSc2836 hypothetical protein. (173 aa)
Rpic_3378PFAM: Domain of unknown function DUF1835; KEGG: rso:RSc3094 hypothetical protein. (264 aa)
Rpic_3410PFAM: porin Gram-negative type; KEGG: rso:RSc2933 putative porin signal peptide protein. (386 aa)
Rpic_3857KEGG: rso:RS03006 putative lipoprotein. (356 aa)
Rpic_4241PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: rso:RS02601 probable activation/secretion signal peptide protein. (581 aa)
Rpic_4242KEGG: rso:RS02600 putative hemagglutinin-related transmembrane protein. (491 aa)
Rpic_4243KEGG: rso:RS02599 putative hemagglutinin-related transmembrane protein. (374 aa)
Rpic_4572KEGG: reu:Reut_B4200 probable transmembrane protein. (173 aa)
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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